CX294547

Overview
NameCX294547
Unique NameCX294547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4226 contig Ccv1_Contig4226:588..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PFS2_EMENI (Polyadenylation factor subunit 2 OS=Emericella nidulans GN=pfs2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 2
Query:    2 VKLWTVDRPT--SVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-MVEDALVGR 436
            VK W   RP   +V T  + H   V +  W+P  +  F SAS D TL+I+D        ++  H +++ +CDW+     L+ S S D  +K WD R  R  +  L+ H   V   KFS    NLLA+ S D T  ++D  M+ D  + R
Sbjct:  137 VKYW---RPNFNNVETIDDAHHDAVRDLAWSPSDTK-FLSASDDTTLKIYDFTARTCDTVLTGHNWDVKSCDWHPTKG-LLVSGSKDHQVKFWDPRTARC-LTTLHSHKNTVTATKFSRVNNNLLATSSRDQTARVFDLRMMRDICILR 279          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 51/197 (25.89%), Postives = 92/197 (46.70%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVP-IAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-----------VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPR 556
            +++W +   T   TF  H   +Y+  ++ R      S SGD T+R+WD+    +T ++   +           D   +A+ S+DKS+++WD+R Y    +   +GH  +V  V FSP  RNL+ S S D T+ +W+      +           +  ++ H +F + V ++   + +L+ +  D  V  W    DPR
Sbjct:  368 IRVWDIQSRTIRNTFHGHEQDIYSLDFS-RDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAI--SPDKQFVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSPDGRNLV-SGSLDKTIKMWELSAPRGIPSSAPPKGGRCIKTFEGHRDFVLSVALTPDSQWVLSGSK-DRGVQFW----DPR 555          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PFS2_ASPOR (Polyadenylation factor subunit 2 OS=Aspergillus oryzae GN=pfs2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 2
Query:    2 VKLWTVDRPT--SVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-MVEDALVGR 436
            +K W   RP   +V T  + H   V +  W+P  +  F SAS D TL+I+D     +  ++  H +++ +CDW+     L+ S S D  +K WD R  R  +  L+ H   V   +FS   +NLLA+ S D T  ++D  M+ D  + R
Sbjct:  168 IKYW---RPNFNNVETIDDAHHDAVRDLAWSPSDTK-FLSASDDTTLKIFDFTSRTADTVLTGHNWDVKSCDWHPTKG-LLVSGSKDHQVKFWDPRTARC-LTTLHSHKNTVTATRFSRVNQNLLATSSRDQTARVFDLRMMRDICILR 310          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WSB1_MOUSE (WD repeat and SOCS box-containing protein 1 OS=Mus musculus GN=Wsb1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 406
            +K+W V     +    +H   V + T+ P  S +  SAS D TLR+WD+++ G+ + ++ AH+  + +C ++  D  ++ S    K++ +W++  Y + I  L GH + V    FSP    LLA+ SYD  V +WD
Sbjct:  152 IKIWDVYTGKLLLNLVDHIEMVRDLTFAPDGSLLLVSASRDKTLRVWDLKDDGNMVKVLRAHQNWVYSCAFSP-DCSMLCSVGASKAVFLWNMDKYTM-IRKLEGHHHDVVACDFSPDGA-LLATASYDTRVYVWD 284          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 38/126 (30.16%), Postives = 64/126 (50.79%), Query Frame = 2
Query:   53 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGS--TMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV-----PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 409
            H   V +  ++P  +  FCS   D  L +WD R   +  T +  AH+ ++   DWN +DD LI + S D +++++D R         PI    GH  AV  V++SP + ++  S + D  + +WD+
Sbjct:  291 HEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY 416          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: HAT2_NEUCR (Histone acetyltransferase type B subunit 2 OS=Neurospora crassa GN=hat-2 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 53/184 (28.80%), Postives = 81/184 (44.02%), Query Frame = 2
Query:   38 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR--EMGSTMIIP--AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFM----------VEDA---LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            R +  H++ V +   +P       + S D TL+I DVR  E     I+    H   I A  +N   + +IA+AS DK+I IWD+RN +  +  L GH  AV  +++ P    +L S SYD  +  WD             ED    L+  +  HT        +     L+ S   D L+ +W+
Sbjct:  235 RKYTHHSHIVNDVQHHPLVKSWIGTVSDDLTLQIIDVRRPETDKAAIVARNGHSDAINALAFNPRVETIIATASADKTIGIWDMRNMKSKVHTLEGHQDAVTSLEWHPTESAILGSGSYDRRLLFWDISRVGDEQTQDDAEDGPPELLFMHGGHTNHLADFSWNRNDPWLVCSAAEDNLLQIWK 418          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: PFS2_ASPFU (Polyadenylation factor subunit 2 OS=Aspergillus fumigatus GN=pfs2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 48/149 (32.21%), Postives = 74/149 (49.66%), Query Frame = 2
Query:    2 VKLWTVDRPT--SVRTFKE-HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-MVEDALVGR 436
            +K W   RP   +V T  + H   V +  W+P  +  F SAS D TL+I+D     +  ++  H +++ +CDW+     L+ S S D  +K WD R  R  +  L+ H   V   +FS    NLLA+ S D T  ++D  M+ D  + R
Sbjct:   75 IKYW---RPNFNNVETIDDAHHDAVRDLAWSPSDTK-FLSASDDTTLKIFDFTARTADTVLTGHNWDVKSCDWHPTKG-LLVSGSKDHQVKFWDPRTARC-LTTLHSHKNTVTTTRFSRVNSNLLATSSRDQTARVFDLRMMRDICILR 217          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 50/174 (28.74%), Postives = 81/174 (46.55%), Query Frame = 2
Query:   23 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE---DALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            RP        H  C+ +  ++P  S +  SAS D T+++WD         +  H   +   D++K  + L+AS S D +IK+WD + Y   +  L+GH + V  V+F+P    L++S S D T+ +W+         LVG  D   +  V  D S      +AS   D+ +  W
Sbjct:   95 RPPEKHILTGHRNCINSVKFHPSFS-LMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKTGN-LLASCSADLTIKLWDFQTYDC-VKTLHGHDHNVSCVRFTPSGDQLISS-SRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGS-----CIASCSNDQTIKTW 259          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: HAT2_ENCCU (Histone acetyltransferase type B subunit 2 OS=Encephalitozoon cuniculi GN=HAT2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 51/185 (27.57%), Postives = 81/185 (43.78%), Query Frame = 2
Query:   26 PTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGR-------------YDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            PT V   + H   V +  ++     +  SA     + +WD R       I  AH  +IL+  ++  D  +IA++S D S+K+WD R+   P+ +L GH   V  V++SPH   +LAS S D  V +WD     A V               +  HT     +  +      +AS   D ++ +WQ
Sbjct:  197 PTVV--LRRHETAVNDCAFSFFDKKLLSSAGDGGMVVLWDTRSEDCIHAIEEAHTSDILSVRFSPLDGNVIATSSCDGSVKVWDRRSLSQPLHILLGHSKDVVSVEWSPHNDKVLASGSTDRRVIVWDLGQAGAEVPEEYKAEGPPEMKFLHGGHTSTVCDISWNPAEPFEIASVSEDNILQIWQ 379          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: CIAO1_CANGA (Probable cytosolic iron-sulfur protein assembly protein 1 OS=Candida glabrata GN=CIA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 48/131 (36.64%), Postives = 64/131 (48.85%), Query Frame = 2
Query:   53 HAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR----------EMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV----RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLW 403
            H   V +  W P HSD+  + S D T+ IW             EM    II  HE E+    W++ D CL+A+ S DKS+ IW+       Y   I+VL  H   V+ V +   + NLLAS SYD TV +W
Sbjct:   58 HKKAVRSVAWRP-HSDLLAAGSFDSTISIWTQSDLDLEEGAKLEMELLAIIEGHENEVKGISWSQ-DGCLLATCSRDKSVWIWETDEAGEEYEC-ISVLQEHSQDVKHVVWHT-KHNLLASSSYDDTVRIW 184          
The following BLAST results are available for this feature:
BLAST of CX294547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PFS2_EMENI7.378e-1233.56Polyadenylation factor subunit 2 OS=Emericella nid... [more]
RCO1_NEUCR9.636e-1225.89Transcriptional repressor rco-1 OS=Neurospora cras... [more]
PFS2_ASPOR9.636e-1232.21Polyadenylation factor subunit 2 OS=Aspergillus or... [more]
WSB1_MOUSE1.258e-1131.62WD repeat and SOCS box-containing protein 1 OS=Mus... [more]
MSI4_ARATH1.258e-1130.16WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
HAT2_NEUCR1.258e-1128.80Histone acetyltransferase type B subunit 2 OS=Neur... [more]
PFS2_ASPFU2.147e-1132.21Polyadenylation factor subunit 2 OS=Aspergillus fu... [more]
LIS1_DICDI2.804e-1128.74Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
HAT2_ENCCU2.804e-1127.57Histone acetyltransferase type B subunit 2 OS=Ence... [more]
CIAO1_CANGA2.804e-1136.64Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionC05054A08SK FlavRip1 Citrus clementina cDNA clone C05054A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294547 ID=CX294547; Name=CX294547; organism=Citrus clementina; type=EST; length=599bp
GGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGTGCGAACATTTAAAG
AACACGCGTATTGCGTGTACAACGCCACGTGGAACCCGCGTCACAGCGAC
GTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGAATTTGGGATGTGAG
AGAGATGGGCAGCACGATGATAATTCCGGCCCACGAGTTTGAAATTTTAG
CTTGTGATTGGAACAAGTACGATGACTGTTTAATTGCGAGTGCTTCAGTT
GATAAGAGTATTAAAATTTGGGATGTGAGGAACTATAGAGTTCCAATTGC
TGTATTAAATGGACATGGCTATGCCGTGAGGAAAGTGAAATTTTCACCGC
ACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACATGACTGTGTGCTTA
TGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGGTATGATCATCACAC
TGAGTTTGCCGTTGGGGTTGATATGAGTGTACTTGTTGAGGGATTGTTGG
CCAGTACTGGATGGGATGAGCTTGTCTATGTGTGGCAGCAAGGAATGGAT
CCCAGAGCGGTTTGATACTTGTTAGGAAGGGATTTTTCTTTTCTTCTTT
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