CX294547

Overview
NameCX294547
Unique NameCX294547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WSB1_DANRE (WD repeat and SOCS box-containing protein 1 OS=Danio rerio GN=wsb1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 406
            +K+W V     +    +H   V + T+ P  S V  SAS D TLR+WD+++ G+ + +       + C     D  ++ S    K++ +WD+  Y + I  L GH   V   +FSP    LLA+ SYD  V +WD
Sbjct:  153 IKIWDVYTGKLLLNLMDHTDIVRDLTFAPDGSLVLVSASRDKTLRVWDLKDDGNMVKVLRGHQNWVYCSAFSPDSSVLCSVGAGKAVFLWDMDKYTL-IRKLEGHHNDVVCCEFSPDGA-LLATASYDTRVIVWD 285          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 2
Query:   20 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW--------NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY 439
            DRP  ++TF+ H   V    W+P   ++  S S D TL+IW +++      + AH  EI    W        N   + ++ASAS D ++++WDV +  + I  L  H   V  V FSP  R  LAS S+D  V +W+     ALV  Y
Sbjct:  339 DRP--IKTFQGHTNEVNAIKWDPT-GNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV-DRGICIHTLTKHQEPVYSVAFSPDGR-YLASGSFDKCVHIWNTQT-GALVHSY 480          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 2
Query:   20 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDW--------NKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRY 439
            DRP  ++TF+ H   V    W+P   ++  S S D TL+IW +++      + AH  EI    W        N   + ++ASAS D ++++WDV +  + I  L  H   V  V FSP  R  LAS S+D  V +W+     ALV  Y
Sbjct:  339 DRP--IKTFQGHTNEVNAIKWDPT-GNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDV-DRGICIHTLTKHQEPVYSVAFSPDGR-YLASGSFDKCVHIWNTQT-GALVHSY 480          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: NUDF_EMENI (Nuclear distribution protein nudF OS=Emericella nidulans GN=nudF PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 57/190 (30.00%), Postives = 89/190 (46.84%), Query Frame = 2
Query:   23 RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVWQ-QGMDPRAV*YLLGRD 583
            +P+S  T   H   V    ++P  + +  S S DCT++IWD         +  H   +   D+  +  + L+AS S D +IK+WD       I  L+GH ++V  V+F     N L S S D T+ +WD +     V      TE  +  D+S   +G  L S G D+ + VW+    +P+A   LLG +
Sbjct:  103 KPSSTHTLTSHRDAVTCVAFHPVFTSL-ASGSEDCTIKIWDWELGEIERTLKGHIRGVSGLDYGGQKGNTLLASCSSDLTIKLWDPSKDYANIRTLSGHDHSVSSVRFLTSNDNHLISASRDGTLRIWD-VSTGFCVKVIKSATESWIR-DVSPSFDGKWLVSGGRDQAITVWEVSSAEPKAA--LLGHE 287          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 50/178 (28.09%), Postives = 81/178 (45.51%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V LW V +   + +   H   V +  +N    ++  + S   T++I+D+        +  H   I   D++ + +  +AS S D ++K+WDVR  +  I    GH   V  +KFSP  +  L + S D T+ LWD +    L   + +HT    G++     E LLAS   D  V  W
Sbjct:   41 VNLWAVGKQNCIISLSGHTSPVDSVKFNSSE-ELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGE-FVASGSTDTNVKLWDVRR-KGCIYTYKGHSDQVNMIKFSPDGK-WLVTASEDTTIKLWD-LTMGKLFQEFKNHTGGVTGIEFHP-NEFLLASGSSDRTVQFW 212          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTGWDELVYVW 535
            +KLW V     ++T K H+  V+   +NP  S++  S S D +++IW+V+       + AH   I A  ++  +  LI S S D   +IWD  + +    + +     V  VKFSP+ + +L + + D T+ LWD+     L     H  E + +    SV     + S   D +VY+W
Sbjct:  105 LKLWDVRSGKCLKTLKGHSDFVFCCDFNP-PSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFH-CNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYIL-TATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIW 280          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WDR24_DICDI (WD repeat-containing protein 24 homolog OS=Dictyostelium discoideum GN=wdr24 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/142 (28.17%), Postives = 66/142 (46.48%), Query Frame = 2
Query:    2 VKLWTVDRPTSV---RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 409
            V +W   R  S    R F +H+  V    W+P   D   + S D TLR+WD+R+  +   I   P  E  I    +N       A+A  + +I++WD+R   + +  +  H   V  + + P  +N++AS   D  + +WDF
Sbjct:   95 VVIWNTVREGSKSVERVFTDHSRAVNKLAWHPEKLDCILTGSQDNTLRMWDIRDSANASKITFSPKSE-SIRDVQFNPSQANQFAAAFDNGTIQLWDIRKPTIAVEKITSHQGLVLTIDWHPEEKNIIASGGRDRAIRVWDF 235          
The following BLAST results are available for this feature:
BLAST of CX294547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
WSB1_DANRE3.662e-1131.85WD repeat and SOCS box-containing protein 1 OS=Dan... [more]
TBL1R_MOUSE4.782e-1133.78F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TBL1R_HUMAN4.782e-1133.78F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
NUDF_EMENI4.782e-1130.00Nuclear distribution protein nudF OS=Emericella ni... [more]
KTNB1_STRPU4.782e-1128.09Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
WDR5B_RAT8.157e-1128.49WD repeat-containing protein 5B OS=Rattus norvegic... [more]
WDR24_DICDI8.157e-1128.17WD repeat-containing protein 24 homolog OS=Dictyos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054A08SK FlavRip1 Citrus clementina cDNA clone C05054A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294547 ID=CX294547; Name=CX294547; organism=Citrus clementina; type=EST; length=599bp
GGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGTGCGAACATTTAAAG
AACACGCGTATTGCGTGTACAACGCCACGTGGAACCCGCGTCACAGCGAC
GTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGAATTTGGGATGTGAG
AGAGATGGGCAGCACGATGATAATTCCGGCCCACGAGTTTGAAATTTTAG
CTTGTGATTGGAACAAGTACGATGACTGTTTAATTGCGAGTGCTTCAGTT
GATAAGAGTATTAAAATTTGGGATGTGAGGAACTATAGAGTTCCAATTGC
TGTATTAAATGGACATGGCTATGCCGTGAGGAAAGTGAAATTTTCACCGC
ACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACATGACTGTGTGCTTA
TGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGGTATGATCATCACAC
TGAGTTTGCCGTTGGGGTTGATATGAGTGTACTTGTTGAGGGATTGTTGG
CCAGTACTGGATGGGATGAGCTTGTCTATGTGTGGCAGCAAGGAATGGAT
CCCAGAGCGGTTTGATACTTGTTAGGAAGGGATTTTTCTTTTCTTCTTT
back to top