CX294553

Overview
NameCX294553
Unique NameCX294553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11426 contig Ccv1_Contig11426:926..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294553 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.057e-18
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    4 KRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFK-QELSGASPELVNKLIPDHVKRQLGL 249
            K +P E+IDL S++L Y PS R   +E CAHPFFDELR+P   LP+G+PLPPLFNF   E +   P+L   LIP H   Q+ L
Sbjct:  306 KDVPAESIDLISKILLYDPSSRLKPVEICAHPFFDELRDPKTCLPDGKPLPPLFNFTIAEQTSIGPKLAKTLIPSHAMNQIEL 388          
BLAST of CX294553 vs. ExPASy Swiss-Prot
Match: GSK3A_HUMAN (Glycogen synthase kinase-3 alpha OS=Homo sapiens GN=GSK3A PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    7 RMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPDHVKRQLGLNFLHPA 267
            R PPEAI L S LL+Y+PS R + LEACAH FFDELR    +LPN RPLPPLFNF        P L   LIP H++   G   L P+
Sbjct:  371 RTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRCLGTQLPNNRPLPPLFNFSAGELSIQPSLNAILIPPHLRSPAGTTTLTPS 457          
BLAST of CX294553 vs. ExPASy Swiss-Prot
Match: GSK3A_MOUSE (Glycogen synthase kinase-3 alpha OS=Mus musculus GN=Gsk3a PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    7 RMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPDHVKRQLG 246
            + PPEAI L S LL+Y+PS R + LEACAH FFDELR   A+LPN RPLPPLFNF        P L   LIP H++   G
Sbjct:  372 KTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRRLGAQLPNDRPLPPLFNFSPGELSIQPSLNAILIPPHLRSPAG 451          
BLAST of CX294553 vs. ExPASy Swiss-Prot
Match: GSK3A_RAT (Glycogen synthase kinase-3 alpha OS=Rattus norvegicus GN=Gsk3a PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 45/80 (56.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    7 RMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPDHVKRQLG 246
            R PPEAI L S LL+Y+PS R + LEACAH FFDELR    +LPN RPLPPLFNF        P L   LIP H++   G
Sbjct:  371 RTPPEAIALCSSLLEYTPSSRLSPLEACAHSFFDELRSLGTQLPNNRPLPPLFNFSPGELSIQPSLNAILIPPHLRSPSG 450          
BLAST of CX294553 vs. ExPASy Swiss-Prot
Match: GSK3H_DROME (Putative glycogen synthase kinase-3 homolog OS=Drosophila melanogaster GN=gskt PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 RMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELR-EPNARLPNGRPLPPLFNFKQELSGASPELVNKLIP 222
            R P EAIDL S++L YSP+ R + L  CAHPFFDELR +P+ +LPNGR LPPLFNF        P+ +  L+P
Sbjct:  285 RTPAEAIDLVSKMLIYSPNARVSPLMGCAHPFFDELRQDPHQQLPNGRSLPPLFNFTDYEKTIEPDTMPLLLP 357          
BLAST of CX294553 vs. ExPASy Swiss-Prot
Match: GSK3_SCHPO (Protein kinase gsk3 OS=Schizosaccharomyces pombe GN=gsk3 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    4 KRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNG-------RPLPPLFNFKQELSGASPELVNKLIPDHVKRQL 243
            + +P +A+DL S++LQY+P+ R TA EA  HPFFDELR+PN +L N        R LP LFNF        P+L  KLIP H +  L
Sbjct:  283 RSVPLDALDLLSKMLQYTPTDRLTAAEAMCHPFFDELRDPNTKLHNSRNPDASPRHLPELFNFSPFELSIRPDLNQKLIPSHARDAL 369          
BLAST of CX294553 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   13 PPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPL 162
            P EAIDL S++++Y+P+ R T   AC H FFDELR P+ARLP+GRPLP L
Sbjct:  290 PAEAIDLISKIIEYTPTSRPTPQAACQHAFFDELRNPDARLPSGRPLPTL 339          
The following BLAST results are available for this feature:
BLAST of CX294553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GSK3_DICDI3.057e-1853.01Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
GSK3A_HUMAN5.215e-1854.02Glycogen synthase kinase-3 alpha OS=Homo sapiens G... [more]
GSK3A_MOUSE1.162e-1756.25Glycogen synthase kinase-3 alpha OS=Mus musculus G... [more]
GSK3A_RAT1.517e-1756.25Glycogen synthase kinase-3 alpha OS=Rattus norvegi... [more]
GSK3H_DROME3.164e-1554.79Putative glycogen synthase kinase-3 homolog OS=Dro... [more]
GSK3_SCHPO3.498e-1447.13Protein kinase gsk3 OS=Schizosaccharomyces pombe G... [more]
GSK3_CAEEL1.244e-1162.00Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionC05054B05SK FlavRip1 Citrus clementina cDNA clone C05054B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294553 ID=CX294553; Name=CX294553; organism=Citrus clementina; type=EST; length=595bp
CACAAACGGATGCCTCCTGAGGCTATTGATCTCGCTTCACGCCTGTTGCA
GTATTCACCAAGTCTCCGATGTACAGCGCTAGAAGCATGTGCACATCCTT
TCTTTGATGAACTGCGTGAGCCAAATGCTCGCCTACCAAATGGTCGCCCA
CTGCCACCTCTCTTCAACTTTAAACAGGAATTATCGGGGGCTTCACCAGA
GCTTGTTAATAAGTTGATACCAGACCATGTGAAACGGCAATTAGGTCTGA
ATTTCTTGCATCCAGCCGGGACATAGGCCTAGACAAGTAATATAGAAGTG
AAATCTACTTGGTGATGTGTAGCACAAAGGGAATTATATCCTTGTTCGTA
ACTGCCATGCATTGAGGCTTAATCAGCATCAGTTGTTGCTCGATCAGCAA
GCCTACATTCTCAGGCTGCTATGCTTTCTTGGTGCCTTCTTTTTCTGCTT
TTCCATCCTCCTGTGTCTCCTCCCCACTTCGTCCCACCCCCCCTCCTCTG
TTAAAGTTCCCATTTGTTTATGTACATGTTTGATAGTAAAGATAGGTTAA
GTTGATAAGGTGGACTGATCAGACCGCTGCTAGTAGAGGAAAAAC
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