CX294560

Overview
NameCX294560
Unique NameCX294560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: C4AE1_DROME (Cytochrome P450 4ae1 OS=Drosophila melanogaster GN=Cyp4ae1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 49/153 (32.03%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  121 ILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGK--CKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA 573
            +LDTLL    D    +  K ++         G+DTT+S + + +  L  +               G+   + +  SD   LPYL  VVKE+LRL+P +P +  R   KD+ I    +P G  V V +W + RDE+ + +P  F PER LG  A
Sbjct:  275 LLDTLLRATVDGQ-PLTDKQIRDEVNTFIFEGHDTTTSAVSFCLYLLSRHEAVQQKLFEELRMHYGQDLFRGVILSDFATLPYLSCVVKESLRLYPPIPAVA-RCLEKDLVIDEGYIPVGTNVVVLLWQLLRDEAIFTDPLVFQPERHLGEEA 425          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP4P1_DROME (Cytochrome P450 4p1 OS=Drosophila melanogaster GN=Cyp4p1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 48/152 (31.58%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  121 ILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGK-CKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIA-GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSN 570
            +LDTL  I  +K   I+   +      L   G DTTS  + + +  +  NP           + +      ++   + +L YL+  +KET RL P+VP++  R+A ++  +A G  +PKGAQ+ ++V+ I R+   WD+P  F PERFL  N
Sbjct:  292 MLDTL--IYAEKDGLIDHIGICEEVDTLMFEGYDTTSIGLIFGLMNMSLNPDKQELCYQEIQEHIDDDLSNLDVGQLNKLKYLEYFMKETTRLFPSVPIM-GREAVQETELANGLILPKGAQITIHVFDIHRNAKYWDSPEEFRPERFLPEN 440          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP4A7_RABIT (Cytochrome P450 4A7 OS=Oryctolagus cuniculus GN=CYP4A7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 45/178 (25.28%), Postives = 76/178 (42.70%), Query Frame = 1
Query:   49 DRLVDQRLKHRQEHGCSISTECK---DILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA 573
            DR++ QR    Q+ G       K   D LD LL    +    +  + L+         G+DTT+S + W    L  +P             +G    I    + ++PY    +KE LRL+P VP +  + ++      G ++PKG  + ++++ +  +   W NP  F P RF   +A
Sbjct:  265 DRVIQQRKAQLQQEGELEKVRRKRRLDFLDVLLFAKMENGSSLSDQDLRAEVDTFMFEGHDTTASGISWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDKMPYTTMCIKEALRLYPPVPGVGSKLSSPVTFPDGRSLPKGIIITLSIYGLHHNPKVWPNPEVFDPSRFAPGSA 442          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 47/157 (29.94%), Postives = 69/157 (43.95%), Query Frame = 1
Query:  118 DILDTLLNIIQDKSVE----IETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD 576
            D+L  ++N    K ++    +    L          G +TTSST+ + + EL  +P            T     P     + ++ YL  VV ETLR+ P +   L R   KDV I G T+PKG  V V ++ +  +   W  P  F PERF  +N D
Sbjct:  270 DLLQLMINSQNSKEIDNHKALSDIELVAQSTIFIFGGYETTSSTLSFIIYELTTHPHVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFP-IAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPEEFRPERFSKNNKD 425          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP3AP_MOUSE (Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  196 ADLFIAGN-DTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQI 591
            A +FI G  D TS+++   M EL  +P           +T+    P+    +  + YL  VV E+LRL+P + + L R + KDV I G  +PKG  V + ++ + R+   W  P  F PERF   N   KG I
Sbjct:  299 AVIFIFGGYDATSTSISLIMYELATHPDVQKKLQDEIDRTLPNKAPVTYDALMDMEYLDMVVNESLRLYP-IAIRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYWPEPQEFCPERFSKEN---KGNI 427          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP24A_RAT (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp24a1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.202e-11
Identity = 40/145 (27.59%), Postives = 69/145 (47.59%), Query Frame = 1
Query:  127 DTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL 561
            D L +I Q     +  K L     +L +A  +TT++++ W +  L  NP             +   +     D+  +PYL+A +KE++RL P+VP    R   K   +  + +PKG  + +N   +G  E  +++ H F PER+L
Sbjct:  300 DFLCDIYQQD--HLSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPFTT-RTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWL 441          

HSP 2 Score: 20.4014 bits (41), Expect = 1.202e-11
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  615 GRRICPGLPLAIRMLHL 665
            G+R+C G  LA   LHL
Sbjct:  458 GKRMCIGRRLAELQLHL 474          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP4A5_RABIT (Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CYP4A5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 45/178 (25.28%), Postives = 76/178 (42.70%), Query Frame = 1
Query:   49 DRLVDQRLKHRQEHGCSISTECK---DILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA 573
            DR++ QR    Q+ G       K   D LD LL    +    +  + L+         G+DTT+S + W    L  +P             +G    I    + ++PY    +KE +RL+P VP +    ++      G ++PKG  V ++++ +  + + W NP  F P RF   +A
Sbjct:  265 DRVIQQRKAQLQQEGELEKVRRKRRLDFLDVLLFAKMENGSSLSDQDLRAEVDTFMFEGHDTTASGVSWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEAMRLYPPVPAISRDLSSPVTFPDGRSLPKGFTVTLSIYGLHHNPNVWPNPEVFDPGRFTPGSA 442          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP3AE_CAVPO (Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 59/194 (30.41%), Postives = 87/194 (44.85%), Query Frame = 1
Query:   13 ITVYSAKMLEVFDRLVDQRLKHRQEHGCSISTECKDILDTLLNIIQDKSVEI-----ETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDIT-RLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD 576
            I+++    L+ F + V    K ++ H  S   +  D L  +LN    K  E      + + L      +F AG +TTSST+ + M  L  +P           +T+   K     D+   + YL  VV ETLRL+P V   + R + KD  I G + PKG  V +  +A+ RD   W  P  F PERF   N +
Sbjct:  238 ISIFPRDSLKFFTKFVK---KTKENHLESNKKQRVDFLQMMLNSQNFKDTESHKALSDVEILAQSIIFIF-AGYETTSSTLSFIMYSLATHPDVQKKLQQEIDKTLPN-KAFPTYDVMMEMEYLDMVVNETLRLYP-VTNRIERMSKKDFEINGMSFPKGTGVMIPSFALHRDSKYWPEPDEFRPERFSKKNKE 425          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP312_DROME (Probable cytochrome P450 312a1 OS=Drosophila melanogaster GN=Cyp312a1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  124 LDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCK--PIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQILS*IPF 609
            LDTLL         +  K ++     +   G D T++T+ + M  +  +P              GK K  PI    + +L +L+A +KETLR++P+ PL   RKAT +  I  F +PKG+ V ++   +GR +  + +P  F P+R+    A+ K +  + IPF
Sbjct:  287 LDTLLLSKGPDGKPLTVKDIREEVDTIIFGGFDLTATTLNFFMYNMTLHPEHQQRCREEVWSVCGKDKSEPISIEQVRQLEFLEACIKETLRMYPSGPLTA-RKATANCTINDFFIPKGSDVIISPIYMGRCKDFFPDPMVFKPDRW-AIGAEPKIEATTFIPF 448          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: C5082_DICDI (Probable cytochrome P450 508A2 OS=Dictyostelium discoideum GN=cyp508a2-1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = 1
Query:  115 KDILDTLLNIIQDKSVEIETKHLK--HFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVG-----------KCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIA-GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD 576
            +D++D L   I++   E + + L      +D F+AG DT+++++E  +  L++ P             +            +   +  SD    P++ ++ KETLR  P  P  LPR  T D+ +  G  +PK AQ+ +N  A+ R+E  ++NP+ F P RFL S+++
Sbjct:  262 RDLMDLL---IKEYGTETDDQILSISATVSDFFLAGVDTSATSLELIVMMLINYPEYQEKAYNEIKSALSSNGGGGGGGLTQRNKVLLSDRQSTPFVVSLFKETLRYKPISPFGLPRSTTSDIILNNGQFIPKNAQILINYHALSRNEEYFENPNQFDPTRFLNSDSN 426          
The following BLAST results are available for this feature:
BLAST of CX294560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
C4AE1_DROME7.321e-1232.03Cytochrome P450 4ae1 OS=Drosophila melanogaster GN... [more]
CP4P1_DROME9.562e-1231.58Cytochrome P450 4p1 OS=Drosophila melanogaster GN=... [more]
CP4A7_RABIT9.562e-1225.28Cytochrome P450 4A7 OS=Oryctolagus cuniculus GN=CY... [more]
CP3AS_BOVIN9.562e-1229.94Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3AP_MOUSE9.562e-1233.83Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE... [more]
CP24A_RAT1.202e-1127.591,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
CP4A5_RABIT1.249e-1125.28Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CY... [more]
CP3AE_CAVPO1.249e-1130.41Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14... [more]
CP312_DROME1.249e-1129.88Probable cytochrome P450 312a1 OS=Drosophila melan... [more]
C5082_DICDI1.249e-1127.98Probable cytochrome P450 508A2 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC05054C02SK FlavRip1 Citrus clementina cDNA clone C05054C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294560 ID=CX294560; Name=CX294560; organism=Citrus clementina; type=EST; length=684bp
ATAAAGCGCCGCATCACAGTTTATAGTGCCAAGATGCTCGAGGTGTTTGA
TCGCTTGGTTGATCAACGATTGAAGCATAGACAAGAACATGGTTGCAGTA
TTAGCACCGAATGTAAAGATATATTAGATACTCTTCTCAATATTATCCAA
GACAAGAGTGTTGAGATTGAAACAAAACATCTCAAGCACTTTTTTGCGGA
TTTGTTTATTGCGGGGAATGACACAACTTCAAGTACAATGGAATGGGCAA
TGGCAGAACTACTCCACAACCCTGAGGCTTTATTGAAAGCAAAATTGGAG
CTAGAACAAACAGTTGGCAAGTGTAAACCAATTGAGGAATCTGACATCAC
TCGGCTACCTTATCTACAAGCTGTTGTTAAAGAAACTTTGAGATTGCACC
CTGCAGTTCCCTTATTACTTCCCCGCAAAGCCACAAAAGATGTTGCAATT
GCAGGCTTCACAGTGCCAAAAGGTGCACAAGTTTTTGTCAATGTATGGGC
TATTGGCAGAGATGAAAGCACATGGGACAACCCACACACTTTTATTCCCG
AAAGGTTCTTAGGGTCAAATGCTGATTTCAAAGGCCAGATTTTGAGCTAA
ATTCCCTTCGAGCTGGACGACGAATTTGTCCTGGTTTACCATTGGCAATC
AGAATGTTACATCTAATGGTGGGTTCACTTATTA
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