CX294560

Overview
NameCX294560
Unique NameCX294560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: C16B2_PICSI (Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 47/153 (30.72%), Postives = 72/153 (47.06%), Query Frame = 1
Query:  115 KDILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKP---IEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG 564
            +D+L  LL+ + ++   +    ++     L  AG+DT+SST+   +  L  NP              G  +    +E  D+ R+ Y   V +E LRL PA      RKA K+    GFT+PKG +++  V +  R    + NP TF P RF G
Sbjct:  272 QDLLSFLLSNVDEQGESLTDNEIQDNILLLLYAGHDTSSSTLTVLLKFLAENPHCYEEVLREQLDIAGSKEAGQLLEWEDLQRMKYSWRVAQEALRLFPAAQGSF-RKAIKEFIYDGFTIPKGWKMYWTVNSTHRKSEYFSNPETFDPSRFEG 423          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP51_MYCVP (Lanosterol 14-alpha demethylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=cyp51 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 42/149 (28.19%), Postives = 70/149 (46.98%), Query Frame = 1
Query:  115 KDILDTLLNII-QDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERF 558
            +D+LD L++I  +D +       +   F  L  AG+ T+S T  W + ELL +P                 + +    + ++P L   +KETLRLHP + ++L R A  +  +AG+ + KG  V  +     R    + NP  F P+R+
Sbjct:  224 RDMLDVLVSIKDEDGNPRFTANEITGMFISLMFAGHHTSSGTSSWTLIELLRHPEFYAKVQQELDDLYADGQEVSFHALRQIPSLDNALKETLRLHPPL-IILMRVAQDEFEVAGYPIHKGQMVAASPAISNRIPEDFPNPDDFDPDRY 371          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 53/186 (28.49%), Postives = 80/186 (43.01%), Query Frame = 1
Query:   49 DRLVDQRLKHRQEHGCSISTECKDILDTLLNIIQDKSVEIETKHLKHFFAD-----LFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQI 591
            +R+ + RL  +Q+H         D L  ++N   +   +   K L              AG +TTSST+ + +  L  +P           +T+    P     +  + YL  V+ ETLRL+P +   L R   KDV + G  +PKG+ V +  +A+  D   W  P  F PERF   N   KG I
Sbjct:  254 NRMKESRLDSKQKHRV-------DFLQLMMNAHNNSKDKDSHKALSDMEITAQSIVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMVLNETLRLYP-IGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWPEPEEFQPERFSKEN---KGSI 428          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP2CD_RAT (Cytochrome P450 2C13, male-specific OS=Rattus norvegicus GN=Cyp2c13 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 41/136 (30.15%), Postives = 61/136 (44.85%), Query Frame = 1
Query:  175 KHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFK 582
            +HL     DLF AG +T SSTM +A+  L+  P             +G+ +     D + +PY  A+V E  R     P  L  + T D     + +PKG  V  ++ ++  D   + NP  F P  FL  N +FK
Sbjct:  285 EHLAIMVTDLFFAGIETVSSTMRFALLLLMKYPHVTAKVQEEIDHVIGRHRSPCMQDRSHMPYTNAMVHEVQRYIDIGPNGLLHEVTCDTKFRNYFIPKGTAVLTSLTSVLHDSKEFPNPEMFDPGHFLDENGNFK 420          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP27B_HUMAN (25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial OS=Homo sapiens GN=CYP27B1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  199 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTV--GKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG 564
            +L +AG DT S+T+ WA+ EL  +P             +  G       + +++LP L+AVVKE LRL+P VP    R   KD+ +  + +PK   V +  +A  RD + +  P++F P R+LG
Sbjct:  313 ELLLAGVDTVSNTLSWALYELSRHPEVQTALHSEITAALSPGSSAYPSATVLSQLPLLKAVVKEVLRLYPVVPGN-SRVPDKDIHVGDYIIPKNTLVTLCHYATSRDPAQFPEPNSFRPARWLG 435          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 40/153 (26.14%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  118 DILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVA-IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA 573
            D LD LL +  +  +++    L+         G+DTT+S + W +  +   P             +G     +  D+ ++ YL   +KE  RL+P VP +  R+  K V  + G ++P G+ + ++++A+ R+ + W +P  F P RF   NA
Sbjct:  284 DFLDILLGVRDESGIKLSDAELRAEVDTFMFEGHDTTTSGISWFLYCMALYPEHQQLCREEVRGILGDQDSFQWDDLAKMTYLTMCMKECFRLYPPVPQVY-RQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVWPDPEVFDPLRFSPENA 435          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 46/179 (25.70%), Postives = 80/179 (44.69%), Query Frame = 1
Query:   49 DRLVDQRLKHRQEHGCSISTECK---DILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIA-GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA 573
            DR++  R  H Q+ G   + + K   D LD LL    +    +    ++        AG+D+T+S + W +  L  NP             +G    I    + ++PY    +KE LRL+P VP  + R+ +K +    G ++P G  + ++++ +  +   W NP  F P RF   +A
Sbjct:  258 DRVIQLRKTHLQKEGEMENVKKKRHLDFLDILLFARMENGNSLSDTDVRAEVDTFMAAGHDSTASGISWVLYALASNPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVP-SVGRELSKPITFPDGRSLPAGIILSLSIYGLHHNPQVWPNPEEFDPSRFAPGSA 435          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP4AB_HUMAN (Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 41/152 (26.97%), Postives = 67/152 (44.08%), Query Frame = 1
Query:  118 DILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA 573
            D LD LL    +    +  K L+         G+DTT+S + W +  L  +P             +G    I  + + ++PY    +KE LRL+P VP +    +T      G ++PKG  V ++++ +  +   W NP  F P RF   +A
Sbjct:  290 DFLDILLLAKMENGSILSDKDLRAEVDTFMFEGHDTTASGISWILYALATHPKHQERCREEIHSLLGDGASITWNHLDQMPYTTMCIKEALRLYPPVPGIGRELSTPVTFPDGRSLPKGIMVLLSIYGLHHNPKVWPNPEVFDPFRFAPGSA 441          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: C49A1_DROME (Probable cytochrome P450 49a1 OS=Drosophila melanogaster GN=Cyp49a1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 46/134 (34.33%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  199 DLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITR-----LPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKG 585
            DLF+ G DTTS      + +L  NP             + K  P  E+DI +     +PYL+A VKETLR+ P V +   R    D  I G+ VPKG  V      +  D + +  P  F+PER+L  + D  G
Sbjct:  385 DLFLVGVDTTSVAASSTIYQLAKNPDKQKKLF----DELQKVFPHREADINQNVLEQMPYLRACVKETLRMRPVV-IANGRSLQSDAVINGYHVPKGTHVIFPHLVVSNDPAYFPEPKRFLPERWLKQSTDAAG 513          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: C12C1_DROME (Probable cytochrome P450 12c1, mitochondrial OS=Drosophila melanogaster GN=Cyp12c1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 55/198 (27.78%), Postives = 89/198 (44.95%), Query Frame = 1
Query:   22 YSAKMLEVFDRL------VDQRLKHRQEHGCSISTECKDILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKC-KPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQIL 594
            +S  M E+FD          +R+  +   G S   + K +L+ LL I +  +V +          D+ + G DTTS+ +   +  L  NP             +          D+  LPYL+AV+KE+LRL+P V     R A  DV + G+ +PKG ++ +    + +D+  +     FIPER+L    D K  +L
Sbjct:  264 FSRAMDEIFDTCSMYVNQAIERIDRKSSQGDS--NDHKSVLEQLLQIDRKLAVVMAM--------DMLMGGVDTTSTAISGILLNLAKNPEKQQRLREEVLSKLTSLHSEFTVEDMKSLPYLRAVIKESLRLYP-VTFGNARSAGADVVLDGYRIPKGTKLLMTNSFLLKDDRLYPRAKEFIPERWLRRKDDDKSDVL 450          
The following BLAST results are available for this feature:
BLAST of CX294560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
C16B2_PICSI1.249e-1130.72Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP71... [more]
CP51_MYCVP1.631e-1128.19Lanosterol 14-alpha demethylase OS=Mycobacterium v... [more]
CP341_MOUSE1.631e-1128.49Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
CP2CD_RAT1.631e-1130.15Cytochrome P450 2C13, male-specific OS=Rattus norv... [more]
CP27B_HUMAN1.631e-1133.8725-hydroxyvitamin D-1 alpha hydroxylase, mitochond... [more]
CP4B1_RAT2.130e-1126.14Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP4AL_PIG2.130e-1125.70Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
CP4AB_HUMAN2.130e-1126.97Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE... [more]
C49A1_DROME2.130e-1134.33Probable cytochrome P450 49a1 OS=Drosophila melano... [more]
C12C1_DROME2.130e-1127.78Probable cytochrome P450 12c1, mitochondrial OS=Dr... [more]

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Properties
Property NameValue
Genbank descriptionC05054C02SK FlavRip1 Citrus clementina cDNA clone C05054C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294560 ID=CX294560; Name=CX294560; organism=Citrus clementina; type=EST; length=684bp
ATAAAGCGCCGCATCACAGTTTATAGTGCCAAGATGCTCGAGGTGTTTGA
TCGCTTGGTTGATCAACGATTGAAGCATAGACAAGAACATGGTTGCAGTA
TTAGCACCGAATGTAAAGATATATTAGATACTCTTCTCAATATTATCCAA
GACAAGAGTGTTGAGATTGAAACAAAACATCTCAAGCACTTTTTTGCGGA
TTTGTTTATTGCGGGGAATGACACAACTTCAAGTACAATGGAATGGGCAA
TGGCAGAACTACTCCACAACCCTGAGGCTTTATTGAAAGCAAAATTGGAG
CTAGAACAAACAGTTGGCAAGTGTAAACCAATTGAGGAATCTGACATCAC
TCGGCTACCTTATCTACAAGCTGTTGTTAAAGAAACTTTGAGATTGCACC
CTGCAGTTCCCTTATTACTTCCCCGCAAAGCCACAAAAGATGTTGCAATT
GCAGGCTTCACAGTGCCAAAAGGTGCACAAGTTTTTGTCAATGTATGGGC
TATTGGCAGAGATGAAAGCACATGGGACAACCCACACACTTTTATTCCCG
AAAGGTTCTTAGGGTCAAATGCTGATTTCAAAGGCCAGATTTTGAGCTAA
ATTCCCTTCGAGCTGGACGACGAATTTGTCCTGGTTTACCATTGGCAATC
AGAATGTTACATCTAATGGTGGGTTCACTTATTA
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