CX294560

Overview
NameCX294560
Unique NameCX294560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: C555A_DICDI (Probable cytochrome P450 555A1 OS=Dictyostelium discoideum GN=cyp555a1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 46/179 (25.70%), Postives = 83/179 (46.37%), Query Frame = 1
Query:   40 EVFDRLVDQRLKHRQEHGCSISTECKDILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLH--NPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSN 570
            E  +  V +RL+   ++  + +    +    LL +++ KS  +    +     DL IAG+DT S      +  L +  N              + +   I  S+ ++ PY  +V+KE  R     PL  P +  KD+ + G+ +P G+Q+  NV++   ++  W+NP  F P+RFL +N
Sbjct:  239 EYIENQVQKRLEILNKNNNNNNNNINECFVDLL-LLKFKSNLLTWNEVIKTTTDLMIAGSDTNSLFTIHLIIALTNRENIQNKVFNEILNFYILNENNKITFSNKSKTPYYNSVLKEVERRFTVSPLSQPHRTNKDIILNGYFIPSGSQIIQNVYSCHLNDKDWENPFQFNPDRFLNNN 416          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: STCF_EMENI (Probable sterigmatocystin biosynthesis P450 monooxygenase stcF OS=Emericella nidulans GN=stcF PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 50/168 (29.76%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   58 VDQRLKHRQEHGCSISTECKDILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVA-IAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERF 558
            VD+RLKH        +T   D+ D++L    D    +    +    + + +AG++T+++T+   +  LL NP                   I+   +T++  LQAV+ E+LRL+PAVP+   R      A +AG  VP G  V V  +A  R  + +  P  FIPER+
Sbjct:  240 VDRRLKHA-------TTTRGDLWDSVLADPPDGEPPMSRAEMVSNASAIVLAGSETSATTLSGCLWLLLTNPEYLQQLTERIRARFSTATVIDAQTVTQIQGLQAVLDESLRLYPAVPMQSNRIVPPPGARLAGSWVPGGTSVAVQQFAACRSPTNFHRPDEFIPERW 400          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP4P3_DROME (Probable cytochrome P450 4p3 OS=Drosophila melanogaster GN=Cyp4p3 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 46/153 (30.07%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  121 ILDTLLNIIQDKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVG-KCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIA-GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNA 573
            +LDTL  I+ +K   I+   +      L   G DTTS  + + +  +   P             +  +   +    + +L  L+  +KET+RL P+VP  + R+ T++  ++ G  +PKG+Q+FV+V+ I R+   WD+P  F PERFL  N+
Sbjct:  294 MLDTL--ILAEKDGLIDHIGICEEVDTLMFEGYDTTSIGLMFGLMNMSLYPEEQEKCYQEIQANIDDELNILNIGQLNKLKNLEYFIKETMRLFPSVP-AMGRETTRETELSNGLILPKGSQIFVHVFDIHRNPEYWDSPEEFRPERFLPENS 443          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 56/197 (28.43%), Postives = 87/197 (44.16%), Query Frame = 1
Query:   16 TVYSAKMLEVFDRLVDQRLKHRQEHGCSISTECKDILDTLLNIIQDKSVEIETKHLKHFF----ADLFIAGN-DTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQI 591
            +++  + +  F + V    K+R +   S      D L  ++N    K  E + K L        A +FI G  D TS+++ + M EL   P           + +    P+    +  + YL  VV E+LRL+P +   L R + KDV I G  +PKG  V + ++ + R+   W  P  F PERF   N   KG I
Sbjct:  239 SIFPRQSMNFFKKFVKTMKKNRLD---SNQKNRVDFLQLMMNTQNSKGQESQ-KALSDLEMAAQAIIFIFGGYDATSTSISFIMYELATRPNVQKKLQNEIDRALPNKAPVTYDALMEMEYLDMVVNESLRLYP-IATRLDRVSKKDVEINGVFIPKGTVVTIPIYPLHRNPEYWLEPEEFNPERFSKEN---KGSI 427          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP11A_RAT (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Rattus norvegicus GN=Cyp11a1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 38/129 (29.46%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  175 KHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL 561
            K+++    ++   G DTTS T++W + E+ HN                + +      +  +P L+A +KETLRLHP + + L R    D+ +  + +P    V V  +A+GR+ S + NP+ F P R+L
Sbjct:  311 KNIQANITEMLAGGVDTTSMTLQWNLYEMAHNLKVQEMLRAEVLAARRQAQGDMAKMVQLVPLLKASIKETLRLHP-ISVTLQRYIVNDLVLRNYKIPAKTLVQVASYAMGRESSFFPNPNKFDPTRWL 438          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP11A_PIG (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Sus scrofa GN=CYP11A1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = 1
Query:  172 TKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD 576
            ++ +K    ++   G DTTS T++W + E+  +                + +      +  +P L+A +KETLRLHP + + L R    D+ +  + +P    V V V+A+GRD + + NP  F P R+LG   D
Sbjct:  312 SEDVKANVTEMLAGGVDTTSMTLQWHLYEMARSLNVQEMLREEVLNARRQAQGDTSKMLQLVPLLKASIKETLRLHP-ISVTLQRYLVNDLVLRDYMIPAKTLVQVAVYAMGRDPAFFSNPGQFDPTRWLGKERD 445          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP11A_HORSE (Cholesterol side-chain cleavage enzyme, mitochondrial OS=Equus caballus GN=CYP11A1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 38/140 (27.14%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  157 SVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD 576
            S ++  K ++    ++   G DTTS +++W + E+  N                + +    + +  +P L+A +KETLRLHP + + L R    D+ I  + +P    V V+++ +G+D + + NP  F P R+L  N D
Sbjct:  307 SNKLPFKDIQANVTEMLAGGVDTTSMSLQWHLYEIARNLRVQEMLREEVLAARRQAQGDTSTMVQMVPLLKASIKETLRLHP-IAVTLQRYPQNDLVIRDYMIPAKTLVQVSIYTMGQDPTFFSNPRRFDPTRWLDKNKD 445          
BLAST of CX294560 vs. ExPASy Swiss-Prot
Match: CP2M1_ONCMY (Cytochrome P450 2M1 OS=Oncorhynchus mykiss GN=cyp2m1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.693e-11
Identity = 39/144 (27.08%), Postives = 62/144 (43.06%), Query Frame = 1
Query:  151 DKSVEIETKHLKHFFADLFIAGNDTTSSTMEWAMAELLHNPXXXXXXXXXXXQTVGKCKPIEESDITRLPYLQAVVKETLRLHPAVPLLLPRKATKDVAIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFK 582
            D + E    ++      LF AG +TTSST+  +   ++  P           + +G   P  + D  ++PY  AV+ E  R     P  +P K  +D     + +P+G  V   + ++  D   + NP  F PE FL  N  FK
Sbjct:  284 DPNTEFNNGNMVMTAWSLFAAGTETTSSTLRQSFLMMIKYPHIQESVQKEIDEVIGSRVPTVD-DRVKMPYTDAVIHEVQRYMDLSPTSVPHKVMRDTEFYNYHIPEGTMVLPLLSSVLVDPKLFKNPDEFDPENFLDENGVFK 426          

HSP 2 Score: 20.4014 bits (41), Expect = 9.693e-11
Identity = 10/23 (43.48%), Postives = 13/23 (56.52%), Query Frame = 3
Query:  615 GRRICPGLPLAIRMLHLMVGSLI 683
            G+R CPG  LA   L L   S++
Sbjct:  437 GKRACPGEALARVELFLFFTSVL 459          
The following BLAST results are available for this feature:
BLAST of CX294560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
C555A_DICDI6.198e-1125.70Probable cytochrome P450 555A1 OS=Dictyostelium di... [more]
STCF_EMENI8.094e-1129.76Probable sterigmatocystin biosynthesis P450 monoox... [more]
CP4P3_DROME8.094e-1130.07Probable cytochrome P450 4p3 OS=Drosophila melanog... [more]
CP3AI_RAT8.094e-1128.43Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]
CP11A_RAT8.094e-1129.46Cholesterol side-chain cleavage enzyme, mitochondr... [more]
CP11A_PIG8.094e-1128.89Cholesterol side-chain cleavage enzyme, mitochondr... [more]
CP11A_HORSE8.094e-1127.14Cholesterol side-chain cleavage enzyme, mitochondr... [more]
CP2M1_ONCMY9.693e-1127.08Cytochrome P450 2M1 OS=Oncorhynchus mykiss GN=cyp2... [more]

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Properties
Property NameValue
Genbank descriptionC05054C02SK FlavRip1 Citrus clementina cDNA clone C05054C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294560 ID=CX294560; Name=CX294560; organism=Citrus clementina; type=EST; length=684bp
ATAAAGCGCCGCATCACAGTTTATAGTGCCAAGATGCTCGAGGTGTTTGA
TCGCTTGGTTGATCAACGATTGAAGCATAGACAAGAACATGGTTGCAGTA
TTAGCACCGAATGTAAAGATATATTAGATACTCTTCTCAATATTATCCAA
GACAAGAGTGTTGAGATTGAAACAAAACATCTCAAGCACTTTTTTGCGGA
TTTGTTTATTGCGGGGAATGACACAACTTCAAGTACAATGGAATGGGCAA
TGGCAGAACTACTCCACAACCCTGAGGCTTTATTGAAAGCAAAATTGGAG
CTAGAACAAACAGTTGGCAAGTGTAAACCAATTGAGGAATCTGACATCAC
TCGGCTACCTTATCTACAAGCTGTTGTTAAAGAAACTTTGAGATTGCACC
CTGCAGTTCCCTTATTACTTCCCCGCAAAGCCACAAAAGATGTTGCAATT
GCAGGCTTCACAGTGCCAAAAGGTGCACAAGTTTTTGTCAATGTATGGGC
TATTGGCAGAGATGAAAGCACATGGGACAACCCACACACTTTTATTCCCG
AAAGGTTCTTAGGGTCAAATGCTGATTTCAAAGGCCAGATTTTGAGCTAA
ATTCCCTTCGAGCTGGACGACGAATTTGTCCTGGTTTACCATTGGCAATC
AGAATGTTACATCTAATGGTGGGTTCACTTATTA
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