CX294566

Overview
NameCX294566
Unique NameCX294566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL3_PONAB (ADP-ribosylation factor-like protein 3 OS=Pongo abelii GN=ARL3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 69/158 (43.67%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  127 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 600
            +E+RIL++GLD AGKTT+L +L   +I    PT GFN+++V+ +     VWD+GGQ KIRP W++YF+NT  L                 EL  +L E++L    +L+FANKQDL  A  A+EI + L LH++R R W IQS  A +GEG+ +G++W+
Sbjct:   16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDIL-----------------ELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 156          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.432e-31
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 1
Query:  136 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 585
            +++M+GLD AGKTTILYKLK   +V T+PT+GFNVE +E   ++S T+WD+GGQ ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  +     LV ANKQ+ P+A+   EI ++L L   +   W +++  A +G+GL E
Sbjct:   12 QVVMLGLDCAGKTTILYKLKGNRLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERFQDHCWELRACSALTGQGLQE 162          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL6_CAEBR (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis briggsae GN=arl-6 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.453e-30
Identity = 75/177 (42.37%), Postives = 110/177 (62.15%), Query Frame = 1
Query:   94 FTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLST 606
            F    S LF   KK++ I++VGLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  +L+  ++  R   +++ ANK D+P AM  A+IT  LGL+  R   W I STCA +G+GL + +  LS+
Sbjct:    3 FLSSLSNLFGMGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRVRMELLKDELWLVLDHKDVASRGIPVVILANKMDIPGAMTCADITAALGLNLHRSGTWSIHSTCALTGDGLDKAMQQLSS 179          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL6_CAEEL (ADP-ribosylation factor-like protein 6 OS=Caenorhabditis elegans GN=arl-6 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.466e-30
Identity = 74/176 (42.05%), Postives = 109/176 (61.93%), Query Frame = 1
Query:   94 FTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 603
            F    S LF   KK++ I++VGLD +GKTTIL +LK  E  +   +PT+G  V     +N+SF  +D+ GQ K R  W  YF ++QG+IFV+DS+DR R+   +DEL  ++   ++  R   +++ ANK D+P AM A++IT  LGL+  R   W I STCA +G+GL + +  LS
Sbjct:    3 FFSSLSSLFGLGKKDVNIVVVGLDNSGKTTILNQLKTPETRSQQIVPTVGHVVTNFSTQNLSFHAFDMAGQMKYRSTWESYFHSSQGVIFVLDSSDRLRMELLKDELMMVMEHKDVVSRGIPIVILANKMDIPGAMTASDITVALGLNLYRSGTWSIHSTCALTGDGLDKAMQQLS 178          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 60/87 (68.97%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   82 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 342
            MG  F KLF  L  KK+MRIL++ LD AGKTTILYKLKLGE V  +PT+GF VETVEYKN +F VWDVG   KIRPLW+H+FQNT+G
Sbjct:    1 MGNIFEKLFKSLLGKKKMRILILSLDTAGKTTILYKLKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTKG 87          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL8B_RAT (ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.116e-28
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  106 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTSLTR 621
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL   S +R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL8B_MOUSE (ADP-ribosylation factor-like protein 8B OS=Mus musculus GN=Arl8b PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.116e-28
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  106 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTSLTR 621
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL   S +R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL8B_HUMAN (ADP-ribosylation factor-like protein 8B OS=Homo sapiens GN=ARL8B PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.116e-28
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  106 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTSLTR 621
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL   S +R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: AR8BA_DANRE (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.116e-28
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  106 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTSLTR 621
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    ++++VD+ DR+++  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL   S +R
Sbjct:   12 FKSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 184          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.681e-28
Identity = 58/173 (33.53%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  106 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTSLTR 621
            F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  V   N++  +WD+GGQ + R +W  Y +    +++++D+ DR++I  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL   S +R
Sbjct:   12 FRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQYSKSR 184          
The following BLAST results are available for this feature:
BLAST of CX294566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
ARL3_PONAB2.219e-3143.67ADP-ribosylation factor-like protein 3 OS=Pongo ab... [more]
ARL11_RAT8.432e-3142.38ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
ARL6_CAEBR2.453e-3042.37ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL6_CAEEL5.466e-3042.05ADP-ribosylation factor-like protein 6 OS=Caenorha... [more]
ARL17_HUMAN6.043e-2968.97ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
ARL8B_RAT5.116e-2833.53ADP-ribosylation factor-like protein 8B OS=Rattus ... [more]
ARL8B_MOUSE5.116e-2833.53ADP-ribosylation factor-like protein 8B OS=Mus mus... [more]
ARL8B_HUMAN5.116e-2833.53ADP-ribosylation factor-like protein 8B OS=Homo sa... [more]
AR8BA_DANRE5.116e-2833.53ADP-ribosylation factor-like protein 8B-A OS=Danio... [more]
ARL8B_MACFA6.681e-2833.53ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]

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Properties
Property NameValue
Genbank descriptionC05054D02SK FlavRip1 Citrus clementina cDNA clone C05054D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294566 ID=CX294566; Name=CX294566; organism=Citrus clementina; type=EST; length=652bp
AATAAGCTTCGTCCTCCACACCCCCCCCCCCTCCCCTCTCTCTCTCGCGT
TCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCTGACTTTCACAA
AGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTAATGGTT
GGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGG
AGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTG
AATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTGGCCAGGACAAG
ATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTT
TGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAAT
TGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTA
TTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCTGAGATTAC
TGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACATCCAGA
GCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGGATTGGCTC
TCCACAACATCGCTAACAAGGGCCTGAGCTGTTAAGATCTTTTTGCGGAC
TG
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