CX294566

Overview
NameCX294566
Unique NameCX294566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.292e-55
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 1
Query:   82 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTSLTR 621
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL  T  +R
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.292e-55
Identity = 97/172 (56.40%), Postives = 131/172 (76.16%), Query Frame = 1
Query:   94 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTT 609
            F+ +FS    KK+ RILM+GLD AGK+T+L+KLKLG++V TIPTIGFNVET+ YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++ +
Sbjct:   13 FSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANS 184          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.292e-55
Identity = 109/173 (63.01%), Postives = 132/173 (76.30%), Query Frame = 1
Query:   82 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 600
            MGL F+K+ S +F   E R LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDVGGQ KIR LW++YF NT  L+FVVDS+D +RI EA++EL  +L E EL D+ LLVFANKQD+PNA + AE+T  L L SL+ R W+I  T A SG+GLYEGL W+
Sbjct:    1 MGLFFSKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWV 173          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.374e-55
Identity = 103/161 (63.98%), Postives = 126/161 (78.26%), Query Frame = 1
Query:  124 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLS 603
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 562          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.374e-55
Identity = 103/161 (63.98%), Postives = 126/161 (78.26%), Query Frame = 1
Query:  124 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLS 603
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 562          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.182e-54
Identity = 107/175 (61.14%), Postives = 134/175 (76.57%), Query Frame = 1
Query:   88 LTFTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLS 603
            +TFTK  +R++   K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS
Sbjct:  369 VTFTK-DNRVYIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 542          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 211.075 bits (536), Expect = 4.156e-54
Identity = 101/174 (58.05%), Postives = 133/174 (76.44%), Query Frame = 1
Query:   82 MGLTFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 600
            MG  F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+EL+DA LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.746e-52
Identity = 98/178 (55.06%), Postives = 134/178 (75.28%), Query Frame = 1
Query:   82 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDWLSTTS 612
            MG + +K+  +LF  KEM+ILM+GLD AGKTTILYKLKL +I T+ PT+GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R+R+ EA++EL+ ++ E E+ + VLLV+ANKQDL +AM   E++D L L  +L+ + W +  + A SG+GL EGL W+S  +
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNNT 178          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 203.371 bits (516), Expect = 8.666e-52
Identity = 100/172 (58.14%), Postives = 125/172 (72.67%), Query Frame = 1
Query:  106 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSTTSLTR 621
            F  L   +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++DEL  ML E+EL  A+L+V ANKQD+   M  AE+   LGL +L+ R + I  T AT GEGL + +DWLS T  +R
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSR 179          
BLAST of CX294566 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.641e-50
Identity = 98/166 (59.04%), Postives = 120/166 (72.29%), Query Frame = 1
Query:  106 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 603
            F  LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE VEYKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  +R EL  ML EDEL+ AVL V ANKQD+   +   E+   LGL +LR R   I  T A+ GEGL   +DWL+
Sbjct:    8 FRGLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLA 173          
The following BLAST results are available for this feature:
BLAST of CX294566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
ARL1_MOUSE1.292e-5558.89ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARFK_DICDI1.292e-5556.40ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARF11_CAEEL1.292e-5563.01ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARD1_MOUSE8.374e-5563.98GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN8.374e-5563.98GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARD1_RAT3.182e-5461.14GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARL1_YEAST4.156e-5458.05ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARF3_YEAST1.746e-5255.06ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARL1_DROME8.666e-5258.14ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]
ARL1_CAEEL3.641e-5059.04ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC05054D02SK FlavRip1 Citrus clementina cDNA clone C05054D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294566 ID=CX294566; Name=CX294566; organism=Citrus clementina; type=EST; length=652bp
AATAAGCTTCGTCCTCCACACCCCCCCCCCCTCCCCTCTCTCTCTCGCGT
TCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCTGACTTTCACAA
AGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAATTCTAATGGTT
GGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCAAGCTTGG
AGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAGACCGTTG
AATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTGGCCAGGACAAG
ATTCGTCCCTTGTGGAGGCATTATTTCCAGAACACTCAAGGTCTCATTTT
TGTTGTGGACAGCAATGACAGAGACCGTATTGTAGAAGCAAGGGATGAAT
TGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTGTTGCTTGTA
TTTGCTAACAAACAGGATCTTCCAAATGCAATGAATGCTGCTGAGATTAC
TGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCCACTGGTACATCCAGA
GCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAAGGTCTGGATTGGCTC
TCCACAACATCGCTAACAAGGGCCTGAGCTGTTAAGATCTTTTTGCGGAC
TG
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