CX294570

Overview
NameCX294570
Unique NameCX294570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.654e-43
Identity = 87/178 (48.88%), Postives = 126/178 (70.79%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY-RIVSKKALTAND 622
            +++FK +++GDSAVGKS LL +F    F+ +S  TIGVEF ++++ I+ K +K QIWDTAGQE++R++T AYYRGAV AM+VYDIT+R SF+++  WL + R  +  ++  +L+GNK+DLE  R V T +AKEFAEK GL F ETSA  + NV+ AF     +I  ++ S   L +N+
Sbjct:   22 EHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLLSNE 199          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.261e-42
Identity = 83/176 (47.16%), Postives = 120/176 (68.18%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 619
            DY+FK++LIGDS VGK+ LL RF+ D F+    +TIG++F+ +T+ +  K +K QIWDTAGQER+R +T+AYYRGA+G MLVYDIT  +SFDN+  W+  +  HA  ++  M++GNK D+   R V  E  ++ A   G+ F+ETSA  S NVE AF T+  +I   +++K   +N
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSN 181          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.647e-42
Identity = 87/172 (50.58%), Postives = 121/172 (70.35%), Query Frame = 2
Query:   71 GNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-EGLCFMETSALESTNVELAFLTVLTEI 583
            G+ +   D++FK+VL+GD++VGK+ ++ RF    FS    +TIGV+F  KTL I  K VK QIWDTAGQER+R +T +YYR A GA+L YDI+KR +F +V  W+E++R +A  NI+ +L+GNKSDL   R VP  +A+  AE  + LC +ETSA +S+NVE AF  V TE+
Sbjct:    7 GDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.647e-42
Identity = 84/171 (49.12%), Postives = 124/171 (72.51%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 592
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T   SF+NV +W++E++ +A  ++  +LVGNK DL   + V T  A+E+A+  G+ F+ETSA  S NVE AF+ + +EI ++
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKL 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.791e-42
Identity = 82/171 (47.95%), Postives = 118/171 (69.01%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 604
            DY+FK++LIGDS VGK+ LL RF+ D F+    +TIG++F+ +T+ +  K +K QIWDTAGQER+R +T+AYYRGA+G M VYDIT  +SFDN+  W+  +  HA  ++  M++GNK D+   R V  E  ++ A   G+ F+ETSA  S NVE AF+T+  +I   ++KK
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKK 176          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.258e-42
Identity = 82/176 (46.59%), Postives = 119/176 (67.61%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 619
            DY+FK++LIGDS VGK+ LL RF+ D F+    +TIG++F+ +T+ +  K +K QIWDTAGQER+R +T+AYYRGA+G MLVYDIT  +SFDN+  W+  +  HA  ++  M++GNK D+   R V  E  ++ A   G+ F+E SA  S NVE AF T+  +I   +++K   +N
Sbjct:    6 DYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSN 181          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.067e-41
Identity = 86/164 (52.44%), Postives = 117/164 (71.34%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            D+ FKI+LIGDS VGKS LL RFA D ++    +TIGV+F+ KTL +  K +K QIWDTAGQER+R +TS+YYRGA G +LVYD T + SF NV +W+ E+  +A +N+  +LVGNK+DL   + V +  AK FAE  G+ F+ETSA  +TNVE  F+++  +I
Sbjct:    8 DFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDI 171          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.067e-41
Identity = 79/166 (47.59%), Postives = 119/166 (71.69%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 589
            D +FK++LIGDS VGK+ +L RF+ D F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYDIT  +SF+N+++WL  +  HA++++  ML+GNK D++  R VP    ++ A + G+ F ETSA  + N+E AFLT+  +I R
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.067e-41
Identity = 79/166 (47.59%), Postives = 119/166 (71.69%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 589
            D +FK++LIGDS VGK+ +L RF+ D F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYDIT  +SF+N+++WL  +  HA++++  ML+GNK D++  R VP    ++ A + G+ F ETSA  + N+E AFLT+  +I R
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.067e-41
Identity = 79/166 (47.59%), Postives = 119/166 (71.69%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 589
            D +FK++LIGDS VGK+ +L RF+ D F+    +TIG++F+ KT+ +  K +K QIWDTAGQER+  +T++YYRGA+G MLVYDIT  +SF+N+++WL  +  HA++++  ML+GNK D++  R VP    ++ A + G+ F ETSA  + N+E AFLT+  +I R
Sbjct:    7 DLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
The following BLAST results are available for this feature:
BLAST of CX294570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_DICDI9.654e-4348.88Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB8B_HUMAN1.261e-4247.16Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB43_MOUSE1.647e-4250.58Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB1B_DICDI1.647e-4249.12Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB8_DISOM4.791e-4247.95Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8B_BOVIN6.258e-4246.59Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB1D_DICDI1.067e-4152.44Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB10_PONAB1.067e-4147.59Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.067e-4147.59Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.067e-4147.59Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC05054D10SK FlavRip1 Citrus clementina cDNA clone C05054D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294570 ID=CX294570; Name=CX294570; organism=Citrus clementina; type=EST; length=660bp
TTTCTATTGGGTCGCATAGTCTCTTACGAAACGTATCGAATAGAAAATTA
AGATGTCGAACTTTCAGCAAGGTAACTATAATAATAAAATCGATTATGTA
TTCAAAATAGTATTGATTGGAGACTCTGCAGTGGGCAAGTCTCAGCTTTT
GGCTCGTTTTGCAAGAGATGAATTCAGTTTAGATTCAAAGGCCACGATCG
GTGTTGAGTTTCAAACAAAAACACTTGTTATTCATCACAAAAATGTCAAA
GCTCAGATTTGGGACACTGCCGGTCAAGAAAGGTATCGGGCTGTAACAAG
TGCATACTACAGAGGTGCAGTGGGGGCGATGCTGGTCTATGACATAACTA
AGCGTCAGTCATTTGATAATGTGGCGAGGTGGTTAGAGGAACTGCGGGGA
CATGCAGATAAAAATATTATCATCATGCTTGTGGGCAACAAGTCTGACCT
GGAGACCCTGCGAGCTGTACCCACTGAGGATGCGAAAGAGTTTGCTGAAA
AGGAAGGCCTCTGCTTCATGGAGACATCAGCTCTTGAGTCCACTAATGTT
GAGCTTGCTTTCCTCACAGTCTTGACAGAGATTTATCGAATTGTCAGCAA
AAAGGCTCTCACTGCCAATGATGAATCAGAATCTGGTGGGAGTTCTTCGC
TTCTAAGGCT
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