CX294570

Overview
NameCX294570
Unique NameCX294570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.758e-66
Identity = 122/180 (67.78%), Postives = 153/180 (85.00%), Query Frame = 2
Query:   83 NKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            ++ DY+FK VLIGDS VGKS LL RF R+EF+++SK+TIGVEF T+ +V+ +K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDITK+ SFDNV RWL+ELR HAD NI+IMLVGNK+DL  LRAV TE+A+ FA +  L F+ETSA++++NVE AF TVLTEI+RIVS ++L A D
Sbjct:    5 DEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGD 184          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.758e-66
Identity = 124/181 (68.51%), Postives = 150/181 (82.87%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            +++ DY+FK+VLIGDS VGKS LL+RF R+EF+L+SK+TIGVEF TK+L I  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F+   RWL+ELR H D NI++ML+GNKSDL  L  V TED K FAEKE L FMETSALE+TNVE AF  VLT+IYRIVSK+A+ A D
Sbjct:    7 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGD 187          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.758e-66
Identity = 122/181 (67.40%), Postives = 150/181 (82.87%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            +++ DY+FK+VLIGDS VGKS +L+RF R+EF L+SK+TIGVEF T+TL +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+L YDITKRQ+FDNV RWL ELR H D NI+I+L GNKSDL+ LRAV  +D +   +KEGL F+ETSALE+ NV+ AF T+LT+IY I+SKKAL A +
Sbjct:    6 DHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQE 186          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.531e-64
Identity = 118/177 (66.67%), Postives = 149/177 (84.18%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 610
            + + DY+FK+VLIGDS VGKS LL+RF ++EF+L+SK+TIGVEF TKT  +  K VKAQIWDTAGQERYRA+TSAYYRGAVGA+L+YD+T+  +F+N ARWL ELRGH D NI++ML+GNK DL  L AV TE+AK FAE+E L FMETSAL++TNVE AF  VLT+I++IVSK+++
Sbjct:    7 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSV 183          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.019e-61
Identity = 114/170 (67.06%), Postives = 144/170 (84.71%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 601
            DY++KIVLIGDS VGKS LL+RF R+EFSL++K+TIGVEF T+T+    K +KAQ+WDTAGQERYRA+TSAYYRGAVGA+LVYDI K+ ++ +V RW+ ELR +AD+NI IMLVGNKSDL  LR V T++AKEF+EK  L F+ETSAL+S+NVELAF  +LT+IY I+S+
Sbjct:   11 DYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSR 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.861e-61
Identity = 114/176 (64.77%), Postives = 145/176 (82.39%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 619
            +Y+FKIV+IGDSAVGKS LL R+AR+EF+ +SKATIGVEFQT++++I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+  +F+NV RWL+EL  H+D  +  ML+GNK DLE++RAV  E+ K  AE EGL FMETSAL+STNV+ AF  V+ EIY  +S+K L ++
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSD 185          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.341e-60
Identity = 115/176 (65.34%), Postives = 147/176 (83.52%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 619
            +Y+FKIV+IGDSAVGKS LL+R+AR+EFS +SKATIGVEFQT+++ I  K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +F++V RWL+EL+ H+D  +  MLVGNK DLE +RAV  E+ K  AE+EGL F+ETSAL+STNV+ AF  V+ +IY  VS+K L ++
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSD 185          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.529e-59
Identity = 116/184 (63.04%), Postives = 146/184 (79.35%), Query Frame = 2
Query:   53 MSNFQQGNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 604
            M N ++ +YN    +VFK+VLIG+S VGK+ LL+RF R+EFS DS+ TIGVEF T+T+++    VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  V RWL+EL  HA+  I++MLVGNKSDL   R VPTE+A+ FAE  GL F+ETSAL+STNVELAF TVL EI+  VSK+
Sbjct:    1 MGNGKEEDYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.314e-59
Identity = 116/184 (63.04%), Postives = 145/184 (78.80%), Query Frame = 2
Query:   53 MSNFQQGNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 604
            M N  + +YN    +VFK+VLIG+S VGK+ LL+RF R+EFS DS+ TIGVEF T+T+++    VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  V RWL+EL  HA+  I++MLVGNKSDL   R VPTE+A+ FAE  GL F+ETSAL+STNVELAF TVL EI+  VSK+
Sbjct:    1 MGNGTEEDYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.358e-59
Identity = 115/184 (62.50%), Postives = 145/184 (78.80%), Query Frame = 2
Query:   53 MSNFQQGNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 604
            M N  + +YN    +VFK+VLIG+S VGK+ LL+RF R+EFS DS+ TIGVEF T+T+++    +KAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  V RWL+EL  HA+  I++MLVGNKSDL   R VPTE+A+ FAE  GL F+ETSAL+STNVELAF TVL EI+  VSK+
Sbjct:    1 MGNRAEEDYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
The following BLAST results are available for this feature:
BLAST of CX294570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT3_SCHPO4.758e-6667.78GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11E_LOTJA4.758e-6668.51Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC4.758e-6667.40Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA1A_ARATH1.531e-6466.67Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RB11A_DICDI6.019e-6167.06Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
ARA4_ARATH7.861e-6164.77Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH1.341e-6065.34Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB25_RABIT2.529e-5963.04Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN4.314e-5963.04Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_BOVIN7.358e-5962.50Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]

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Properties
Property NameValue
Genbank descriptionC05054D10SK FlavRip1 Citrus clementina cDNA clone C05054D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294570 ID=CX294570; Name=CX294570; organism=Citrus clementina; type=EST; length=660bp
TTTCTATTGGGTCGCATAGTCTCTTACGAAACGTATCGAATAGAAAATTA
AGATGTCGAACTTTCAGCAAGGTAACTATAATAATAAAATCGATTATGTA
TTCAAAATAGTATTGATTGGAGACTCTGCAGTGGGCAAGTCTCAGCTTTT
GGCTCGTTTTGCAAGAGATGAATTCAGTTTAGATTCAAAGGCCACGATCG
GTGTTGAGTTTCAAACAAAAACACTTGTTATTCATCACAAAAATGTCAAA
GCTCAGATTTGGGACACTGCCGGTCAAGAAAGGTATCGGGCTGTAACAAG
TGCATACTACAGAGGTGCAGTGGGGGCGATGCTGGTCTATGACATAACTA
AGCGTCAGTCATTTGATAATGTGGCGAGGTGGTTAGAGGAACTGCGGGGA
CATGCAGATAAAAATATTATCATCATGCTTGTGGGCAACAAGTCTGACCT
GGAGACCCTGCGAGCTGTACCCACTGAGGATGCGAAAGAGTTTGCTGAAA
AGGAAGGCCTCTGCTTCATGGAGACATCAGCTCTTGAGTCCACTAATGTT
GAGCTTGCTTTCCTCACAGTCTTGACAGAGATTTATCGAATTGTCAGCAA
AAAGGCTCTCACTGCCAATGATGAATCAGAATCTGGTGGGAGTTCTTCGC
TTCTAAGGCT
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