CX294570

Overview
NameCX294570
Unique NameCX294570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.141e-58
Identity = 116/184 (63.04%), Postives = 143/184 (77.72%), Query Frame = 2
Query:   53 MSNFQQGNYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 604
            M N    +YN    +VFK+VLIG+S VGK+ LL+RF R+EFS DS+ TIGVEF T+T+++    VKAQIWDTAG ERYRA+TSAYYRGAVGA+LV+D+TK Q++  V RWL+EL  HA+  I++MLVGNKSDL   R VPTE+A  FAE  GL F+ETSAL+STNVELAF TVL EI+  VSK+
Sbjct:    1 MGNRTDEDYN----FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQ 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 8.135e-58
Identity = 111/183 (60.66%), Postives = 140/183 (76.50%), Query Frame = 2
Query:   74 NYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            +Y    D +FKIVLIGDS VGKS LL+RF ++EF++DSK+TIGVEF T+TL I  K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDI+K  S++N   WL ELR +AD N+ + L+GNKSDL  LRAVPTE++K FA++  L F ETSAL S NV+ AF  ++  IY+ VSK  +   D
Sbjct:    5 DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGD 187          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.388e-57
Identity = 107/176 (60.80%), Postives = 139/176 (78.98%), Query Frame = 2
Query:   74 NYNNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 601
            +Y    DY+FKIVLIGDS VGKS LL+RF  DEF+++SK+TIGVEF T+T+ + +K +KAQIWDTAGQERYRA+TSAYYRGAVGA++VYDI+K  S++N   WL ELR +AD N+ + L+GNKSDL  LRAVPT++AK FA +  + F ETSAL S NV+ AF  ++  I+++VSK
Sbjct:    5 DYGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 111/178 (62.36%), Postives = 141/178 (79.21%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIV-SKKALTAND 622
            +Y+FKIV+IGDSAVGKS LL RF R+EF+  +KATIGV+F TK++ I +K + AQ WDTAGQER+RAVTS YYRGAVGAM+VYDIT + SF NV RWL ELR  A+++I+IM+VGNKSDLE  R VPT++A+ FAE   + F+ETSAL STNV  +F  +LT+IY +V SKK +  +D
Sbjct:    8 EYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDD 185          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 91/165 (55.15%), Postives = 126/165 (76.36%), Query Frame = 2
Query:   92 DYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 586
            DY+ KIV+IGDS VGKS LL+R+ ++EFS+   +TIGVEF TKTL I +K +K Q+WDTAGQE+Y ++T +YY+GA+GA++VY+I  R SF+N+ +WL++ R +A ++  IMLVGNKSDL+  R V T + K+FAEK  + F+ETSAL+S NVE AF  +   IY
Sbjct:    9 DYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIY 173          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.455e-46
Identity = 91/181 (50.28%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T R+S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.143e-46
Identity = 91/181 (50.28%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R VTS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.143e-46
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.143e-46
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.143e-46
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
The following BLAST results are available for this feature:
BLAST of CX294570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_MOUSE2.141e-5863.04Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
YPT31_YEAST8.135e-5860.66GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
YPT32_YEAST1.388e-5760.80GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RB11C_DICDI1.175e-5662.36Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI6.461e-4755.15Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RAB1B_MACFA2.455e-4650.28Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_RAT7.143e-4650.28Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB7.143e-4649.72Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN7.143e-4649.72Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN7.143e-4649.72Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionC05054D10SK FlavRip1 Citrus clementina cDNA clone C05054D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294570 ID=CX294570; Name=CX294570; organism=Citrus clementina; type=EST; length=660bp
TTTCTATTGGGTCGCATAGTCTCTTACGAAACGTATCGAATAGAAAATTA
AGATGTCGAACTTTCAGCAAGGTAACTATAATAATAAAATCGATTATGTA
TTCAAAATAGTATTGATTGGAGACTCTGCAGTGGGCAAGTCTCAGCTTTT
GGCTCGTTTTGCAAGAGATGAATTCAGTTTAGATTCAAAGGCCACGATCG
GTGTTGAGTTTCAAACAAAAACACTTGTTATTCATCACAAAAATGTCAAA
GCTCAGATTTGGGACACTGCCGGTCAAGAAAGGTATCGGGCTGTAACAAG
TGCATACTACAGAGGTGCAGTGGGGGCGATGCTGGTCTATGACATAACTA
AGCGTCAGTCATTTGATAATGTGGCGAGGTGGTTAGAGGAACTGCGGGGA
CATGCAGATAAAAATATTATCATCATGCTTGTGGGCAACAAGTCTGACCT
GGAGACCCTGCGAGCTGTACCCACTGAGGATGCGAAAGAGTTTGCTGAAA
AGGAAGGCCTCTGCTTCATGGAGACATCAGCTCTTGAGTCCACTAATGTT
GAGCTTGCTTTCCTCACAGTCTTGACAGAGATTTATCGAATTGTCAGCAA
AAAGGCTCTCACTGCCAATGATGAATCAGAATCTGGTGGGAGTTCTTCGC
TTCTAAGGCT
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