CX294570

Overview
NameCX294570
Unique NameCX294570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 90/181 (49.72%), Postives = 130/181 (71.82%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.329e-46
Identity = 89/168 (52.98%), Postives = 126/168 (75.00%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            N   DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKE+A++ G+ F+ETSA  +TNVE AF+T+  EI
Sbjct:    5 NPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.218e-45
Identity = 89/168 (52.98%), Postives = 125/168 (74.40%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNK DL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 90/177 (50.85%), Postives = 131/177 (74.01%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 610
            N++ DY+FK++LIG+S VGKS LL RF+ D ++ D  +TIGV+F+ KT+ +  K VK QIWDTAGQER+R +TS+YYRG+ G ++VYD+T ++SF+ V  WL+E+  +A   ++ +LVGNK DL+  R V  + AKEFA+   + F+ETSAL+STNVE AFLT+  +I   +S++ L
Sbjct:    2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/176 (49.43%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/176 (49.43%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/176 (49.43%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/176 (49.43%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/176 (49.43%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/176 (49.43%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
The following BLAST results are available for this feature:
BLAST of CX294570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_MOUSE9.329e-4649.72Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST9.329e-4652.98Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1_DISOM1.218e-4552.98Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
YPT1_YEAST2.714e-4550.85GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB2A_RABIT2.714e-4549.43Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB2.714e-4549.43Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE2.714e-4549.43Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA2.714e-4549.43Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN2.714e-4549.43Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK2.714e-4549.43Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionC05054D10SK FlavRip1 Citrus clementina cDNA clone C05054D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294570 ID=CX294570; Name=CX294570; organism=Citrus clementina; type=EST; length=660bp
TTTCTATTGGGTCGCATAGTCTCTTACGAAACGTATCGAATAGAAAATTA
AGATGTCGAACTTTCAGCAAGGTAACTATAATAATAAAATCGATTATGTA
TTCAAAATAGTATTGATTGGAGACTCTGCAGTGGGCAAGTCTCAGCTTTT
GGCTCGTTTTGCAAGAGATGAATTCAGTTTAGATTCAAAGGCCACGATCG
GTGTTGAGTTTCAAACAAAAACACTTGTTATTCATCACAAAAATGTCAAA
GCTCAGATTTGGGACACTGCCGGTCAAGAAAGGTATCGGGCTGTAACAAG
TGCATACTACAGAGGTGCAGTGGGGGCGATGCTGGTCTATGACATAACTA
AGCGTCAGTCATTTGATAATGTGGCGAGGTGGTTAGAGGAACTGCGGGGA
CATGCAGATAAAAATATTATCATCATGCTTGTGGGCAACAAGTCTGACCT
GGAGACCCTGCGAGCTGTACCCACTGAGGATGCGAAAGAGTTTGCTGAAA
AGGAAGGCCTCTGCTTCATGGAGACATCAGCTCTTGAGTCCACTAATGTT
GAGCTTGCTTTCCTCACAGTCTTGACAGAGATTTATCGAATTGTCAGCAA
AAAGGCTCTCACTGCCAATGATGAATCAGAATCTGGTGGGAGTTCTTCGC
TTCTAAGGCT
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