CX294570

Overview
NameCX294570
Unique NameCX294570
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 87/176 (49.43%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNK DL T + V    AKEFA+  G+ F+ETSA  +TNVE +F+T+  EI
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNK DL T + V    AKEFA+  G+ F+ETSA  +TNVE +F+T+  EI
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNK DL T + V    AKEFA+  G+ F+ETSA  +TNVE +F+T+  EI
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 88/168 (52.38%), Postives = 125/168 (74.40%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL+E+  +A +N+  +LVGNK DL T + V    AKEFA+  G+ F+ETSA  +TNVE +F+T+  EI
Sbjct:    5 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 172          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.545e-45
Identity = 90/181 (49.72%), Postives = 129/181 (71.27%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER R +TS+YYRGA G ++VYD+T ++S+ NV +WL+E+  +A +N+  +LVGNKSDL T + V    AKEFA+  G+ F+ETSA  +TNVE AF+T+  EI + +   A +  +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 89/168 (52.98%), Postives = 124/168 (73.81%), Query Frame = 2
Query:   80 NNKIDYVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 583
            N + DY+FK++LIGDS VGKS LL RFA D ++    +TIGV+F+ +T+ +  K +K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++SF+NV +WL E+  +A +N+  +LVGNKSDL   R V T+ AKEFAE  G+ F+ETSA  + NVE AF+ +  +I
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 87/176 (49.43%), Postives = 119/176 (67.61%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE  R V  E+ + FA + GL FMETSA  + NVE AF+    EIY+ +       N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 86/176 (48.86%), Postives = 121/176 (68.75%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAND 622
            Y+FK ++IGD+ VGKS LL +F    F      T+GVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R +F+++  WLE+ R H++ N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  ++NVE AF+    EIY  + +     N+
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINN 180          
BLAST of CX294570 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.898e-45
Identity = 87/169 (51.48%), Postives = 119/169 (70.41%), Query Frame = 2
Query:   95 YVFKIVLIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 601
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  + + I  K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+++  WLE+ R H+  N++IML+GNKSDLE+ R V  E+ + FA + GL FMETSA  + NVE AF+    EIYR + +
Sbjct:    5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173          
The following BLAST results are available for this feature:
BLAST of CX294570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CANFA2.714e-4549.43Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB1A_RAT2.714e-4552.38Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE2.714e-4552.38Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN2.714e-4552.38Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA2.714e-4552.38Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1B_PIG3.545e-4549.72Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_PHYIN4.630e-4552.98Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB2_LYMST6.047e-4549.43Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RAT6.047e-4548.86Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2B_HUMAN7.898e-4551.48Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC05054D10SK FlavRip1 Citrus clementina cDNA clone C05054D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294570 ID=CX294570; Name=CX294570; organism=Citrus clementina; type=EST; length=660bp
TTTCTATTGGGTCGCATAGTCTCTTACGAAACGTATCGAATAGAAAATTA
AGATGTCGAACTTTCAGCAAGGTAACTATAATAATAAAATCGATTATGTA
TTCAAAATAGTATTGATTGGAGACTCTGCAGTGGGCAAGTCTCAGCTTTT
GGCTCGTTTTGCAAGAGATGAATTCAGTTTAGATTCAAAGGCCACGATCG
GTGTTGAGTTTCAAACAAAAACACTTGTTATTCATCACAAAAATGTCAAA
GCTCAGATTTGGGACACTGCCGGTCAAGAAAGGTATCGGGCTGTAACAAG
TGCATACTACAGAGGTGCAGTGGGGGCGATGCTGGTCTATGACATAACTA
AGCGTCAGTCATTTGATAATGTGGCGAGGTGGTTAGAGGAACTGCGGGGA
CATGCAGATAAAAATATTATCATCATGCTTGTGGGCAACAAGTCTGACCT
GGAGACCCTGCGAGCTGTACCCACTGAGGATGCGAAAGAGTTTGCTGAAA
AGGAAGGCCTCTGCTTCATGGAGACATCAGCTCTTGAGTCCACTAATGTT
GAGCTTGCTTTCCTCACAGTCTTGACAGAGATTTATCGAATTGTCAGCAA
AAAGGCTCTCACTGCCAATGATGAATCAGAATCTGGTGGGAGTTCTTCGC
TTCTAAGGCT
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