CX294572

Overview
NameCX294572
Unique NameCX294572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig410 contig Ccv1_Contig410:15..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104
[Close]
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104
The following BLAST results are available for this feature:
BLAST of CX294572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
THIO_STAAS1.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR1.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN1.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM1.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC1.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB1.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA81.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA31.583e-1348.81Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_STAES2.068e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ2.068e-1348.81Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05054E01SK FlavRip1 Citrus clementina cDNA clone C05054E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294572 ID=CX294572; Name=CX294572; organism=Citrus clementina; type=EST; length=570bp
ACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTATCGTT
GGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCA
GAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCA
GCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTG
CTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTG
GCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACT
GAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGT
TCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAG
GAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATA
AGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAAT
ATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGT
TTGTTTGTGTGTTTGAATAT
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