CX294572

Overview
NameCX294572
Unique NameCX294572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig410 contig Ccv1_Contig410:15..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  185 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 430
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  170 TKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 373
            T Q VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  182 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 430
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  182 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 430
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.527e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  182 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 430
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  179 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 427
            LV++DF A WCGPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K K+ L + I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.606e-13
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  182 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 430
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.016e-13
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  182 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 418
            VV+D    WCGPC+ IAP   EL++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V GAK ++L   I
Sbjct:   97 VVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAI 176          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.340e-12
Identity = 30/84 (35.71%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  176 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 427
            ++ VVDF A WCGPC+++ PFL +L+++     F+ V+ D+   +A    V A+PT +  ++G+ +D++VGA  + L   +AK+
Sbjct:   36 KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CX294572 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   95 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 430
            A  E QV+      +W+E L   +ET   V+VDF A WCGPCR IAP + ELAK+    +   K++ DE  + AT + + ++PT +F K G+  D V+GA  K  L + + K++
Sbjct:   65 AVNEVQVVND---SSWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
The following BLAST results are available for this feature:
BLAST of CX294572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
THIO_STAHJ2.700e-1348.81Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_NEUCR2.700e-1353.52Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIOM_RAT3.527e-1342.86Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE3.527e-1342.86Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN3.527e-1342.86Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_CHLCV4.606e-1341.67Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIOM_BOVIN4.606e-1342.86Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXF_PEA6.016e-1345.00Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRX2_SCHPO1.340e-1235.71Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TRXM_PEA1.750e-1238.60Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]

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Properties
Property NameValue
Genbank descriptionC05054E01SK FlavRip1 Citrus clementina cDNA clone C05054E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294572 ID=CX294572; Name=CX294572; organism=Citrus clementina; type=EST; length=570bp
ACGCAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAGAAGTATCGTT
GGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCA
GAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCA
GCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTG
CTTCATGGTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAGCTG
GCCAAGAAACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACT
GAAGAGTGTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGT
TCCTGAAAGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAG
GAACTGCAGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATA
AGTTATAACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAAT
ATATGCTATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGT
TTGTTTGTGTGTTTGAATAT
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