CX294578

Overview
NameCX294578
Unique NameCX294578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294578_ssr79 microsatellite CX294578_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: PSR1_YEAST (Phosphatase PSR1 OS=Saccharomyces cerevisiae GN=PSR1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 67/138 (48.55%), Postives = 93/138 (67.39%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            HS+ +    ADF   V  + Q H VYV  RP +++FLERV  LFE+++FTAS S Y + LL++LD   K+  HR+FRE+C   +GNY+K+LS +GR LS +II+DNSP ++ F   + IPI SWF D  D ELL ++P
Sbjct:  270 HSSFKYLRSADFVLSVEIDDQVHNVYVIKRPGVEEFLERVGKLFEVVVFTASVSRYGDPLLDILDTD-KVIHHRLFREACYNYEGNYIKNLSQIGRPLSDIIILDNSPASYIFHPQHAIPISSWFSDTHDNELLDIIP 406          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: YA22_SCHPO (Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe GN=SPAC2F7.02c PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.658e-28
Identity = 60/139 (43.17%), Postives = 94/139 (67.63%), Query Frame = 2
Query:  209 HSTLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            HS+ +  + ADF   +  +  +H V V  RP + +FL+++  +FEI++FTAS + YA+ +L++LD    + RHR+FRE+C   +GN++KDLS LGR+L   II+DNSP ++ F   + +PI SWF+D  D EL+ L+PF
Sbjct:  170 HSSFKYIEPADFVVSIEIDGLQHDVRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSH-VIRHRLFREACCNYEGNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMHDMELIDLIPF 307          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_XENTR (Serine/threonine-protein phosphatase dullard OS=Xenopus tropicalis GN=dullard PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  R + R R +R+ C    G+Y+KDLSV+  DLS V+I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   84 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGVLRRRFYRQHCTLELGSYIKDLSVVHSDLSSVVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 219          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_RAT (Serine/threonine-protein phosphatase dullard OS=Rattus norvegicus GN=Dullard PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  R + + R +R+ C    G+Y+KDLSV+  DLS ++I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   84 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 219          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_MOUSE (Serine/threonine-protein phosphatase dullard OS=Mus musculus GN=Dullard PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  R + + R +R+ C    G+Y+KDLSV+  DLS ++I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   84 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 219          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_HUMAN (Serine/threonine-protein phosphatase dullard OS=Homo sapiens GN=DULLARD PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  R + + R +R+ C    G+Y+KDLSV+  DLS ++I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   84 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 219          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_BOVIN (Serine/threonine-protein phosphatase dullard OS=Bos taurus GN=DULLARD PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.241e-25
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  R + + R +R+ C    G+Y+KDLSV+  DLS ++I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   84 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 219          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULDB_DANRE (Serine/threonine-protein phosphatase dullard-B OS=Danio rerio GN=dullardl PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  + + + R +R+ C    G+Y+KDLSV+  DLS V+I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   85 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKAILKRRYYRQHCTLDSGSYIKDLSVVHDDLSSVVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 220          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_XENLA (Serine/threonine-protein phosphatase dullard OS=Xenopus laevis GN=dullard PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  + + R R +R+ C    G+Y+KDLSV+  DLS V+I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   84 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNKGVLRRRFYRQHCTLELGSYIKDLSVVHSDLSSVVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 219          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULDA_DANRE (Serine/threonine-protein phosphatase dullard-A OS=Danio rerio GN=dullard PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            T+ P    DF   V  +      +V  RP++  FLE VS  +E+++FTAS  IY   + + LD  R + + R +R+ C    G+Y+KDLSV+  DLS ++I+DNSP A+    DN IPI+SWF D SD  LL LLP
Sbjct:   85 TVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNNRGILKRRYYRQHCTLDLGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLP 220          
The following BLAST results are available for this feature:
BLAST of CX294578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
PSR1_YEAST1.602e-3148.55Phosphatase PSR1 OS=Saccharomyces cerevisiae GN=PS... [more]
YA22_SCHPO1.658e-2843.17Uncharacterized protein C2F7.02c OS=Schizosaccharo... [more]
DULRD_XENTR1.716e-2544.12Serine/threonine-protein phosphatase dullard OS=Xe... [more]
DULRD_RAT2.241e-2542.65Serine/threonine-protein phosphatase dullard OS=Ra... [more]
DULRD_MOUSE2.241e-2542.65Serine/threonine-protein phosphatase dullard OS=Mu... [more]
DULRD_HUMAN2.241e-2542.65Serine/threonine-protein phosphatase dullard OS=Ho... [more]
DULRD_BOVIN2.241e-2542.65Serine/threonine-protein phosphatase dullard OS=Bo... [more]
DULDB_DANRE2.926e-2542.65Serine/threonine-protein phosphatase dullard-B OS=... [more]
DULRD_XENLA3.822e-2543.38Serine/threonine-protein phosphatase dullard OS=Xe... [more]
DULDA_DANRE4.992e-2542.65Serine/threonine-protein phosphatase dullard-A OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05054F02SK FlavRip1 Citrus clementina cDNA clone C05054F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294578 ID=CX294578; Name=CX294578; organism=Citrus clementina; type=EST; length=635bp
TGATGAGTATGGTCAAGAGTCTATGACTGATGTTTGCATGGAGGATGATG
ACTATGAGGAATTTGATGACTTTGATCCTTATTTATTTATAAAAAACTTG
CCAGAATTGTCATCAGTGGTCCCCACTTTTCGGCCTATGTTGCTACCTAA
GCAGACACGGAGTTGCCCCCCTACTACTCTTGTTTTGGACTTGGACGAAA
CTCTGGTGCATTCCACTCTAGAGCCCTGTGATGATGCAGACTTCACATTC
CCTGTAAATTTTAACCTCCAAAAGCATACAGTTTATGTTCGATGCCGTCC
TTATCTCAAAGATTTCTTGGAGAGAGTTTCCAGTCTTTTTGAGATAATCA
TATTCACCGCCAGTCAAAGTATCTATGCAGAGCAGCTTCTAAATGTGCTC
GATCCTAAGAGAAAATTATTTCGGCATCGTGTTTTCCGTGAATCATGTGT
TTTTGTGGATGGCAATTACCTCAAAGATTTGTCAGTTCTTGGCCGTGATT
TGTCACATGTTATCATAGTTGACAACTCCCCACAGGCATTCGGGTTCCAA
GTGGACAATGGAATTCCAATTGAGAGCTGGTTTGATGATCGATCAGATCA
AGAATTGCTTCGATTACTACCATTTTTTGGAGAGC
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