CX294578

Overview
NameCX294578
Unique NameCX294578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294578_ssr79 microsatellite CX294578_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: NEM1_SCHPO (Nuclear envelope morphology protein 1 OS=Schizosaccharomyces pombe GN=nem1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.359e-22
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  284 YVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            Y+  RP+L  FL  VS  F +I+FTAS   YA+ +++ L+  +K+F  R +R+ C  VD +++KD+S+    LS ++I+DNSP ++    +N IPIE W  D SD +LL LL F
Sbjct:  343 YIHKRPHLDYFLSNVSQWFRLILFTASVQPYADPIIDYLERDKKIFAKRYYRQHCALVDSSFVKDISICNIHLSRIMIIDNSPASYNAHKENAIPIEGWISDPSDVDLLNLLSF 456          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_DROPS (Serine/threonine-protein phosphatase dullard homolog OS=Drosophila pseudoobscura pseudoobscura GN=l(1)G0269 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  212 STLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            +T++P    DFT  V  +      +V  RP++  FL+ VS  +++++FTAS  IY   + + LD  R + R R +R+ C    G+Y KDLS +  DL+ + I+DNSP A+    +N IPI+SWF D  D  LL LLP
Sbjct:   82 NTVKPGTPHDFTVKVTIDRNPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIPIKSWFSDPMDTALLSLLP 218          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_DROME (Serine/threonine-protein phosphatase dullard homolog OS=Drosophila melanogaster GN=l(1)G0269 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  212 STLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLP 622
            +T++P    DFT  V  +      +V  RP++  FL+ VS  +++++FTAS  IY   + + LD  R + R R +R+ C    G+Y KDLS +  DL+ + I+DNSP A+    +N IPI+SWF D  D  LL LLP
Sbjct:   82 NTVKPGTPHDFTVKVTIDRNPVRFFVHKRPHVDYFLDVVSQWYDLVVFTASMEIYGAAVADKLDNGRNILRRRYYRQHCTPDYGSYTKDLSAICSDLNRIFIIDNSPGAYRCFPNNAIPIKSWFSDPMDTALLSLLP 218          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_CAEBR (Serine/threonine-protein phosphatase dullard homolog OS=Caenorhabditis briggsae GN=scpl-2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.165e-22
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            T++P   +DFT  V  +       V  RP++  FL  VS  +E+++FTAS  +Y   + + LD  R + + R FR+ C    G Y KDLS +  DLS + I+DNSP A+     N IPI SWF D +D  LL LLPF
Sbjct:   80 TVKPGTPSDFTIRVVIDRHPVKFSVHERPHVDYFLTVVSQWYELVVFTASMEVYGSSVADKLDRGRGILKRRYFRQHCTMEVGGYTKDLSAIHPDLSSICILDNSPGAYRKFPHNAIPIPSWFSDPNDTCLLNLLPF 216          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: DULRD_CAEEL (Serine/threonine-protein phosphatase dullard homolog OS=Caenorhabditis elegans GN=scpl-2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.746e-22
Identity = 56/137 (40.88%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  215 TLEPCDDADFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            T++P   +DFT  V  +       V  RP++  FL  VS  +E+++FTAS  +Y   + + LD  R + + R FR+ C    G Y KDLS +  DLS + I+DNSP A+     N IPI SWF D +D  LL LLPF
Sbjct:   80 TVKPGTPSDFTIRVVIDRHPVKFSVHERPHVDYFLSVVSQWYELVVFTASMEVYGTSVADRLDRGRGILKRRYFRQHCTMEVGGYTKDLSAIHPDLSSICILDNSPGAYRKFPHNAIPIPSWFSDPNDTCLLNLLPF 216          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_USTMA (Mitochondrial import inner membrane translocase subunit TIM50 OS=Ustilago maydis GN=TIM50 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.373e-21
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPFF 628
            RP L  FL  +S  +EI++FT      A  ++  LDP R+   + +FRESC  VDG  +KDL+ L RDLS V++VD +P +F    +NGI ++ W  +R D+EL+ L+PFF
Sbjct:  247 RPGLDHFLGYLSQFYEIVLFTTQPFFTAGPIIEKLDPDRRFITYTLFRESCRTVDGKLVKDLNHLNRDLSKVVVVDTNPDSFHLHPENGILVKPWKGEREDRELIGLIPFF 357          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_YEAST (Mitochondrial import inner membrane translocase subunit TIM50 OS=Saccharomyces cerevisiae GN=TIM50 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.314e-20
Identity = 47/119 (39.50%), Postives = 75/119 (63.03%), Query Frame = 2
Query:  269 QKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            QKH      RP    FL  +S  +EI++F+++  +Y++++   LDP      + +F+E CV+ DG ++KDLS L RDLS VII+D  P ++  Q +N IP+E W +  +D +L+RL+PF
Sbjct:  209 QKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPW-NGEADDKLVRLIPF 326          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_CANGA (Mitochondrial import inner membrane translocase subunit TIM50 OS=Candida glabrata GN=TIM50 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 46/119 (38.66%), Postives = 74/119 (62.18%), Query Frame = 2
Query:  269 QKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            QKH      RP    FL  +S  +EI++F+++  +YAE++   +DP      + +F+E CV+ DG ++KDLS L RDL  V+I+D    ++  Q +N IP++ W D ++D +LLRL+PF
Sbjct:  215 QKHGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYAEKIAEKMDPIHAFISYNLFKEHCVYKDGVHIKDLSKLNRDLKKVMIIDTDENSYKLQPENAIPMDPW-DGKADDKLLRLIPF 332          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_KLULA (Mitochondrial import inner membrane translocase subunit TIM50 OS=Kluyveromyces lactis GN=TIM50 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.555e-18
Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP +  FL  +S  +EI++F+++  +YAE++   LDP      + +F+E C++ DG ++KDLS L RDL  V+I+D    +F  Q +N I +E W D ++D  LLRL+PF
Sbjct:  221 RPGVDYFLGYLSQYYEIVLFSSNYMMYAEKIAEKLDPIHAFITYNLFKEHCLYKDGVHIKDLSKLNRDLGKVLIIDTDENSFKLQPENAIYLEPW-DGKADDRLLRLIPF 329          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: NEM1_YEAST (Nuclear envelope morphology protein 1 OS=Saccharomyces cerevisiae GN=NEM1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  284 YVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPK-RKLFRHRVFRESCVFVDG-NYLKDLSVL----------GRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            ++  RPY   FL +VS  +++IIFTAS   YA+ +++ L+      F  R +R  CV  DG  Y+KDLS++             L  VII+DNSP ++   VDN I +E W  D +D +LL LLPF
Sbjct:  295 FIHKRPYCDLFLTKVSKWYDLIIFTASMKEYADPVIDWLESSFPSSFSKRYYRSDCVLRDGVGYIKDLSIVKDSEENGKGSSSSLDDVIIIDNSPVSYAMNVDNAIQVEGWISDPTDTDLLNLLPF 420          
The following BLAST results are available for this feature:
BLAST of CX294578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
NEM1_SCHPO1.359e-2242.11Nuclear envelope morphology protein 1 OS=Schizosac... [more]
DULRD_DROPS1.775e-2239.42Serine/threonine-protein phosphatase dullard homol... [more]
DULRD_DROME1.775e-2239.42Serine/threonine-protein phosphatase dullard homol... [more]
DULRD_CAEBR5.165e-2240.88Serine/threonine-protein phosphatase dullard homol... [more]
DULRD_CAEEL6.746e-2240.88Serine/threonine-protein phosphatase dullard homol... [more]
TIM50_USTMA4.373e-2143.24Mitochondrial import inner membrane translocase su... [more]
TIM50_YEAST6.314e-2039.50Mitochondrial import inner membrane translocase su... [more]
TIM50_CANGA1.407e-1938.66Mitochondrial import inner membrane translocase su... [more]
TIM50_KLULA1.555e-1840.00Mitochondrial import inner membrane translocase su... [more]
NEM1_YEAST5.910e-1839.68Nuclear envelope morphology protein 1 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionC05054F02SK FlavRip1 Citrus clementina cDNA clone C05054F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294578 ID=CX294578; Name=CX294578; organism=Citrus clementina; type=EST; length=635bp
TGATGAGTATGGTCAAGAGTCTATGACTGATGTTTGCATGGAGGATGATG
ACTATGAGGAATTTGATGACTTTGATCCTTATTTATTTATAAAAAACTTG
CCAGAATTGTCATCAGTGGTCCCCACTTTTCGGCCTATGTTGCTACCTAA
GCAGACACGGAGTTGCCCCCCTACTACTCTTGTTTTGGACTTGGACGAAA
CTCTGGTGCATTCCACTCTAGAGCCCTGTGATGATGCAGACTTCACATTC
CCTGTAAATTTTAACCTCCAAAAGCATACAGTTTATGTTCGATGCCGTCC
TTATCTCAAAGATTTCTTGGAGAGAGTTTCCAGTCTTTTTGAGATAATCA
TATTCACCGCCAGTCAAAGTATCTATGCAGAGCAGCTTCTAAATGTGCTC
GATCCTAAGAGAAAATTATTTCGGCATCGTGTTTTCCGTGAATCATGTGT
TTTTGTGGATGGCAATTACCTCAAAGATTTGTCAGTTCTTGGCCGTGATT
TGTCACATGTTATCATAGTTGACAACTCCCCACAGGCATTCGGGTTCCAA
GTGGACAATGGAATTCCAATTGAGAGCTGGTTTGATGATCGATCAGATCA
AGAATTGCTTCGATTACTACCATTTTTTGGAGAGC
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