CX294583

Overview
NameCX294583
Unique NameCX294583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.529e-31
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPA 270
            ++QIRQIR+KM EI+  +A SCDLK LV KFI E IG++IEK+   IYPLQN FIRKVK+LKAPKFD+ KLMEVHGDYSE+VG K++RPA
Sbjct:  158 SAQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGDYSEEVGAKIERPA 247          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.362e-29
Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 219
            +SQIRQIRRKMREIM  QAASCDLK LV KFI E+IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME
Sbjct:  158 SSQIRQIRRKMREIMTTQAASCDLKELVRKFIPEMIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 230          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 279
            +SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA+ SIYPLQNV++RK KILKAPKFD+ KLME+HG+ +++ G K+ +   EP
Sbjct:  158 SSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGESTDETGTKIAKDFKEP 250          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.381e-28
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 279
            T+Q+R++R+KM EI+  +A SCDLK LV+KF+ E IGREIEKA+ SIYPLQNV+IRK KILKAPKFD+ KL+E+HGD +++ G +V +   EP
Sbjct:  158 TAQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQNVYIRKAKILKAPKFDVSKLLELHGDSTDESGTRVTKDFKEP 250          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.722e-28
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 279
            +SQIRQIR+KM EIM  +A+SCDLK LV+KFI E IGREIEKA   IYPLQNVF+ K KILKAPKFD+ KL+E+HG+ +++ G +V +   EP
Sbjct:  158 SSQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQNVFVHKAKILKAPKFDMSKLLELHGESTDETGTRVVKDFKEP 250          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.722e-28
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPE 288
            ++QIR+IR KM EI+  +  +CDLK LV KFI EVIG+EIEK+ + IYPLQNV+IRKVKILKAPKFDL KLMEVHGDYS E VG  V RP +E   E
Sbjct:  158 SAQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQNVYIRKVKILKAPKFDLTKLMEVHGDYSGEAVGEAVARPVEEKAEE 254          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 7.473e-28
Identity = 55/93 (59.14%), Postives = 75/93 (80.65%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEP 279
            +SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA  SIYPLQNV++RK KILK+PKFD+ KL+E+HGD +++ G ++ +   EP
Sbjct:  158 SSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDSTDETGTRIAKDFKEP 250          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.140e-26
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSS-IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 258
            +SQI  IRRKMREIMV +A +CDLK LV KFI EVIG+EI++  S  IYPLQ+ FIRKVKILKAPKFDL KLMEVHGDY+E+VG K+
Sbjct:  156 SSQIA-IRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 241          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.658e-25
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 291
            +SQIR IR+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  158 SSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_ASPOR (40S ribosomal protein S1 OS=Aspergillus oryzae GN=rps1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.534e-25
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRPADEPMPEA 291
            +SQIR IR+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+  ++D G KV+R   E + E+
Sbjct:  158 SSQIRAIRKKMTEIMQREAASCTLSQLTTKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESTTDDKGHKVEREFKEQVLES 255          
The following BLAST results are available for this feature:
BLAST of CX294583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RS3A_CHLRE5.529e-3170.0040S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A2_VITVI1.362e-2990.4140S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_LENED1.967e-2861.2940S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_COPC74.381e-2861.2940S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_POSPM5.722e-2863.4440S ribosomal protein S1 OS=Postia placenta (strai... [more]
RS3A_OSTLU5.722e-2867.0140S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_LACBS7.473e-2859.1440S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_TORRU3.140e-2672.4140S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A_ASPCL2.658e-2562.2440S ribosomal protein S1 OS=Aspergillus clavatus G... [more]
RS3A_ASPOR4.534e-2562.2440S ribosomal protein S1 OS=Aspergillus oryzae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05054F08SK FlavRip1 Citrus clementina cDNA clone C05054F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294583 ID=CX294583; Name=CX294583; organism=Citrus clementina; type=EST; length=531bp
ACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGC
TCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTG
AAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTA
CAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGA
TCTTGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTG
TGAAGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAA
GTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTC
ACTACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATAT
GAATGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAGCTGAGATGGTTA
CTGTTGTTTCTATGGTAAGAACATGTGCTTTCTTCTTGCTTTATTCTAGT
GGACTAGATTCATGACATTATCCAAAATTTC
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