CX294583

Overview
NameCX294583
Unique NameCX294583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.847e-16
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    4 SQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD----YSEDV----GVKVDRPA--DEPMPEA 291
            SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +V+IRKVK+LK P+FD+ KL+E+H D     +E V    G  +DRP   + P+ EA
Sbjct:  162 SQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHNDGGGKTTEAVVSAEGAVIDRPEGYEPPVQEA 267          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMA (40S ribosomal protein S3a OS=Bombyx mandarina PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    4 SQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRP 267
            +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K +RP
Sbjct:  162 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKREAGDKSERP 252          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_SPOFR (40S ribosomal protein S3a OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 41/92 (44.57%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    4 SQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE----DVGVKVDRP 267
            +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+       + G K +RP
Sbjct:  162 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGSGKRGEAGDKSERP 253          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRP 267
            T++I++IR ++ EI+  + ++CDLK +V K I + I ++  KA S IYPL   FIRKVK+LK PK DL +LME+HG+  S   G  V RP
Sbjct:  159 TTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.119e-15
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    4 SQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKVDRP 267
            +Q+R IR+KM EI+     + +L+ +V K I + I ++IEKA   IYPL++V IRKVK+LK P+F++ KLME+HG+      + G K +RP
Sbjct:  162 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHGEGGGGKGEAGDKSERP 252          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.462e-15
Identity = 38/90 (42.22%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKVDRP 267
            T++I+++R K+ E++  + A CDLKS+V+K I + IG++     SSI+PL    +RKVK+LK PK DLG+++E+H +  +++ G  V RP
Sbjct:  157 TTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.508e-12
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNV 159
            +SQIR IR+KM EI+  +A+SC L+ L  K I EVIGREIEKAT  IYPLQNV
Sbjct:  158 SSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 225
            +SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +I+PLQN+ IRKVK+LK PK D  K+ E++
Sbjct:  164 SSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238          
The following BLAST results are available for this feature:
BLAST of CX294583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RS3A_DROGR3.847e-1643.4040S ribosomal protein S3a OS=Drosophila grimshawi ... [more]
RS3A_BOMMA6.562e-1645.0540S ribosomal protein S3a OS=Bombyx mandarina PE=2... [more]
RS3A_SPOFR8.570e-1644.5740S ribosomal protein S3a OS=Spodoptera frugiperda... [more]
RS3A_SCHJA8.570e-1647.7840S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_BOMMO1.119e-1545.0540S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_TAESO1.462e-1542.2240S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]
RS3A_PODAN7.508e-1266.0440S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_TETTH8.301e-1142.6740S ribosomal protein S3a OS=Tetrahymena thermophi... [more]

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Properties
Property NameValue
Genbank descriptionC05054F08SK FlavRip1 Citrus clementina cDNA clone C05054F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294583 ID=CX294583; Name=CX294583; organism=Citrus clementina; type=EST; length=531bp
ACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGC
TCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTG
AAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTA
CAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGA
TCTTGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTG
TGAAGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAA
GTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTC
ACTACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATAT
GAATGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAGCTGAGATGGTTA
CTGTTGTTTCTATGGTAAGAACATGTGCTTTCTTCTTGCTTTATTCTAGT
GGACTAGATTCATGACATTATCCAAAATTTC
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