CX294583

Overview
NameCX294583
Unique NameCX294583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.243e-23
Identity = 55/86 (63.95%), Postives = 69/86 (80.23%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 258
            +SQIR I +KM +++  QA  C +K LV+K I EVIGR IEKAT++IYPLQNVF+RKVKILKAPK D  KL+E+HG+ S+DVG KV
Sbjct:  158 SSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 242          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.453e-23
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 258
            +SQIR IR+KM +++  QA  C ++ LV+K I E+IGREIEKAT  I+PLQNVF+RKVKILK+PK D  KL+E HG+ ++DVG KV
Sbjct:  158 SSQIRAIRQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQNVFVRKVKILKSPKLDAQKLLEQHGE-AQDVGTKV 242          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.453e-23
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 291
            +SQIR IR+KM EI+  QA+SC L  L  K + EVIGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:  158 SSQIRAIRKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGEASTDDKGQKVEREFKEKVLES 254          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.613e-22
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKV-DRPADEPMPEA 291
            +SQI  IR+KM E++  +++SCDL+  V K I EV+GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    EDVG K+      EP+P+A
Sbjct:  157 SSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.692e-22
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SEDVGVKV-DRPADEPMPEA 291
            +S IR IR+KM EI+  +A SCDL+  V K I EVIGRE+EKAT  I+PL++V++RKVK+LKAPK DL KL+EVHG      +ED GVK  +    EP P A
Sbjct:  157 SSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVKARNTEFKEPAPLA 258          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_PLAVI (40S ribosomal protein S3a OS=Plasmodium vivax GN=PVX_095080 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.692e-22
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 258
            TSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  V
Sbjct:  158 TSQIKKIRKKMVDIMNAEASKVMLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_PLAKH (40S ribosomal protein S3a OS=Plasmodium knowlesi (strain H) GN=PKH_081740 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.128e-22
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 258
            TSQI++IR+KM +IM A+A+   LK LV+KFI E IG+E+EK    IYPLQNV IRKVKILK PK D+ KLME+H D  ED G  V
Sbjct:  158 TSQIKKIRKKMVDIMNAEASKVLLKDLVKKFIPESIGKEVEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDSKEDAGKNV 243          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_PLAF7 (40S ribosomal protein S3a OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P7.35 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.045e-21
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVD 261
            TSQI++IR+KM +IM A+A+   LK LV+KFI E IG+EIEK    IYPLQNV IRKVKILK PK D+ KLME+H D  E+ G  V+
Sbjct:  158 TSQIKKIRKKMVDIMTAEASKVLLKDLVKKFIPESIGKEIEKQCKKIYPLQNVLIRKVKILKRPKLDISKLMELHTDPKEESGKNVN 244          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    7 QIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 264
            Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    7 QIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKVDR 264
            Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G KV+R
Sbjct:  160 QVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
The following BLAST results are available for this feature:
BLAST of CX294583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RS3A1_SCHPO4.243e-2363.9540S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]
RS3A_SCHJY9.453e-2360.4740S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A_NANOT9.453e-2359.1840S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_MALGO1.613e-2253.9240S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_USTMA4.692e-2255.8840S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_PLAVI4.692e-2261.6340S ribosomal protein S3a OS=Plasmodium vivax GN=P... [more]
RS3A_PLAKH6.128e-2261.6340S ribosomal protein S3a OS=Plasmodium knowlesi (... [more]
RS3A_PLAF71.045e-2160.9240S ribosomal protein S3a OS=Plasmodium falciparum... [more]
RS3A_MACFA2.328e-2154.8440S ribosomal protein S3a OS=Macaca fascicularis G... [more]
RS3A_HUMAN2.328e-2154.8440S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]

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Properties
Property NameValue
Genbank descriptionC05054F08SK FlavRip1 Citrus clementina cDNA clone C05054F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294583 ID=CX294583; Name=CX294583; organism=Citrus clementina; type=EST; length=531bp
ACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGC
TCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTG
AAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTA
CAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGA
TCTTGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTG
TGAAGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAA
GTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTC
ACTACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATAT
GAATGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAGCTGAGATGGTTA
CTGTTGTTTCTATGGTAAGAACATGTGCTTTCTTCTTGCTTTATTCTAGT
GGACTAGATTCATGACATTATCCAAAATTTC
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