CX294589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.132e-15 Identity = 50/178 (28.09%), Postives = 86/178 (48.31%), Query Frame = 3 Query: 63 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIXANDTIKLDLEENKITDFIKFDVGNIV 593 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+G +D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K+ + G + +DG + D D+I +D E + +++ G +V Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALV 177
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15 Identity = 51/170 (30.00%), Postives = 84/170 (49.41%), Query Frame = 3 Query: 78 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGN 587 KRL P+ + + + P P G HK+ + L+ ++R+ L+ + RE IL V VDGKV ++ + GFMDV+ I + E++R++Y+ +G L S + A K +V++ + +DGR + D I D + L + KIT+ IK GN Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGN 173
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13 Identity = 49/172 (28.49%), Postives = 85/172 (49.42%), Query Frame = 3 Query: 78 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIV 593 K + AP+ + + +A G HK +PL++ LR+ LK RE+ IL V+VDGKV ++ GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ I D++ + + + +I D +KF GN V Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRV 175 The following BLAST results are available for this feature:
BLAST of CX294589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294589 ID=CX294589; Name=CX294589; organism=Citrus clementina; type=EST; length=598bpback to top |