CX294589

Overview
NameCX294589
Unique NameCX294589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:51..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.728e-29
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+L++R+ LKYA   RE   I+    VLVDG+VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      +    DT+ + + E +I   I F+VG +
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKL 187          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.567e-29
Identity = 68/171 (39.77%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   66 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFD 578
            +KHLKR  +P HW +      +  KPS GPH     LPL++++R+ LK A   RE   I+    VLVDG+ R +  +P GFMDVVSIP+T + +R+L D +GR  LH + +E A FKLCK+ +    + G   +N +DGR     D      D +KL + E +I + I F+
Sbjct:    7 RKHLKRFKSPVHWPIHPKEYKWTVKPSPGPHAIENSLPLMIIVRDILKVADNAREARKIINSGEVLVDGRPRKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFE 176          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 67/186 (36.02%), Postives = 101/186 (54.30%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+LVLR+ L YA   RE   ++    VLVDG  R D  YP G MDV+S+P  NE+F ++ D KGR +L+ ++D     KLCK+ +    + G   +N +DGR          +  + +    D + L + E  I   ++F  G +
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKL 187          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.706e-27
Identity = 67/183 (36.61%), Postives = 106/183 (57.92%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI ++R+ L YA T RE   IL +  +LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEAK K  ++ + +  +     +N +DG     ++   D     + T+ + + E +I   + F+VG  V
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYV 185          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.706e-27
Identity = 66/182 (36.26%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDGKVR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG     P         + T+ + + E +I + + F+ G  V
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDGTNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYV 185          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 69/192 (35.94%), Postives = 106/192 (55.21%), Query Frame = 3
Query:   51 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIXAN-------DTIKLDLEENKITDFIKFDVGNIVM 596
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +DG+VR +  YP GFMDV+ I  T E +R+L      F LH +  EEA+FKL ++      + G   ++ +DGR   IR  DP             T+K+ + E ++  +   +VG++V+
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVI 192          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 65/182 (35.71%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG     P         + T+ + + E +I + + F+ G  V
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDGTNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYV 185          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 66/186 (35.48%), Postives = 103/186 (55.38%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + +    D++ + + E  I   + F  G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKL 187          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + +    D++ + L E  +   ++F+ G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKL 187          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LK A   RE   I+    +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + +    D++ + L E  +   ++F+ G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKL 187          
The following BLAST results are available for this feature:
BLAST of CX294589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METJA1.728e-2939.7830S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_METTH6.567e-2939.7730S ribosomal protein S4e OS=Methanobacterium ther... [more]
RS4E_META31.463e-2836.0230S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_PYRKO4.706e-2736.6130S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_PYRHO4.706e-2736.2630S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_HYPBU8.027e-2735.9430S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_PYRAB1.788e-2635.7130S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METM52.336e-2635.4830S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METVS3.984e-2633.8730S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA3.984e-2633.8730S ribosomal protein S4e OS=Methanococcus vanniel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054G07SK FlavRip1 Citrus clementina cDNA clone C05054G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294589 ID=CX294589; Name=CX294589; organism=Citrus clementina; type=EST; length=598bp
AGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAA
ATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCA
CTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTG
GTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAAC
CGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCA
ACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTG
CTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGT
CTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGA
GGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGA
AAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCT
GACCCACTCATCANAGCCAATGATACCATCAAACTTGACTTAGAAGAGAA
CAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGT
back to top