CX294589

Overview
NameCX294589
Unique NameCX294589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:51..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.203e-26
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 3
Query:   51 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIXAND------TIKLDLEENKITDFIKFDVGNIVM 596
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++++R+ L YA T RE   ++ + H  VDG+VR +  YP G MDV+ I  T E +R++        L  +  EEAK+KL ++ +    + G   +N +DGR   I+  DP     D      T+++ + E +I ++I  D G +V+
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVI 191          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 65/186 (34.95%), Postives = 102/186 (54.84%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + +    D++ + + E  I   + F  G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKL 187          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 65/186 (34.95%), Postives = 102/186 (54.84%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + +    D++ + + E  I   + F  G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKL 187          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 65/183 (35.52%), Postives = 105/183 (57.38%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ ++R+ L YA T RE   IL +   LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + + E +I + + F+ G  V
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYV 185          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.373e-25
Identity = 65/179 (36.31%), Postives = 97/179 (54.19%), Query Frame = 3
Query:   60 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIVM 596
            G +KHLK   APK W +      +  KPS+G H     L L LV+R+ LK A   RE   I+   +VLVDG+V  D  +P GFMD++ IPKT E +R+L D KGR +L+ +  EE   KLCK+ +    + G   +N +DG+ +   +      D I L + +++I +  +   G  V+
Sbjct:    5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVL 181          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.405e-25
Identity = 63/186 (33.87%), Postives = 100/186 (53.76%), Query Frame = 3
Query:   57 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNI 590
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LV+R+ LKYA   RE   I+    +L+DG  R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + +    D++ + + E  I   + F  G +
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKL 187          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.753e-25
Identity = 62/179 (34.64%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   60 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIVM 596
            G  +HLK L AP ++ + K    +  KPS GPH   E +PL+L++R+ LK A T RE   I+  + +LVDGK R D  +  G MDV+SIP+   N+R++ D     RL  +   E+K KL KV   +  + G   + ++DGR        +   D++ ++L    + D ++FD G+ V+
Sbjct:    5 GGSRHLKSLAAPGYYPIAKRERVWVVKPSPGPHAIDEGIPLLLIVRDMLKLATTAREARRIISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVL 183          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 64/178 (35.96%), Postives = 105/178 (58.99%), Query Frame = 3
Query:   63 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIVM 596
            ++ H KRL+APK + + +    +  KPS GPH ++E +PL++++R+ L+ A T RE   I+    +LVDG VR D  +P G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +      D+I L + E ++ D +KF+ G +VM
Sbjct:    2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVM 175          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.855e-24
Identity = 64/190 (33.68%), Postives = 105/190 (55.26%), Query Frame = 3
Query:   60 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIXANDTIKLDLEEN------KITDFIKFDVG 584
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VDG VR +  +P G MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L E       K+ D I F+ G
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEG 196          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 69/191 (36.13%), Postives = 102/191 (53.40%), Query Frame = 3
Query:   51 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIXANDTIKLDLEENKITDFIKFDVGNIVM 596
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+L++RN L YA T RE   ++ + H  VDG VR D  +P GFMDV+ +  T E FR+L      F+LH + +EE   K  ++ +    + G   +N +DGR I  R  DP      +    DT+ + +   +I   IKF  G I +
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAI 191          
The following BLAST results are available for this feature:
BLAST of CX294589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_STAMF5.203e-2636.6530S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_METM76.796e-2634.9530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM66.796e-2634.9530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_PYRFU1.977e-2535.5230S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METS33.373e-2536.3130S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_METMP4.405e-2533.8730S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_KORCO5.753e-2534.6430S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_ARCFU2.186e-2435.9630S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_METKA2.855e-2433.6830S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_AERPE3.729e-2436.1330S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054G07SK FlavRip1 Citrus clementina cDNA clone C05054G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294589 ID=CX294589; Name=CX294589; organism=Citrus clementina; type=EST; length=598bp
AGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAA
ATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCA
CTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTG
GTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAAC
CGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCA
ACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTG
CTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGT
CTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGA
GGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGA
AAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCT
GACCCACTCATCANAGCCAATGATACCATCAAACTTGACTTAGAAGAGAA
CAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGT
back to top