CX294590

Overview
NameCX294590
Unique NameCX294590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.856e-37
Identity = 79/139 (56.83%), Postives = 96/139 (69.06%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+T P  +TNTCCSHPL    EL E +ALGVR AAQR+L  EL I  E+VP +E   L RI Y A SDG W EHE+DY+L + ++ +  P+
Sbjct:   27 NDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPD 164          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.157e-36
Identity = 75/139 (53.96%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  EL I  E+V ++E   L RI Y A SDG W EHE+DY+LF+ ++ +  P+
Sbjct:   27 NDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPD 164          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.124e-36
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  EL I  E+V ++E   L RI Y A SDG W EHE+DY+LF+ ++ +  P+
Sbjct:   27 NDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPD 164          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.034e-36
Identity = 75/139 (53.96%), Postives = 97/139 (69.78%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  EL I  E+V  +E   L RI Y A SDG W EHE+DY+LF+ ++ +  P+
Sbjct:   27 NDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWGEHEIDYILFLKKNVTLNPD 164          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.267e-33
Identity = 75/141 (53.19%), Postives = 90/141 (63.83%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            +D   G  +K  CHLM  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  EL +     P D FT L RI Y+A SDG W EHE+DY+LF       T N
Sbjct:   40 DDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGN 180          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.793e-31
Identity = 69/139 (49.64%), Postives = 94/139 (67.63%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  EL I  E +  ++   +    + A SD  W EHE+ YLL + ++ +  P+
Sbjct:   27 NDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPD 164          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.058e-31
Identity = 71/132 (53.79%), Postives = 88/132 (66.67%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLF 397
            ND  + +  K  CHLME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  EL I A+ +P D+F  L RI Y+A S G W EHE+DY+LF
Sbjct:   28 NDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILF 158          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 7.050e-28
Identity = 69/135 (51.11%), Postives = 86/135 (63.70%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELVICAEDVPV-DEFTPLGRILYMASSDGTWVEHELDYLLF 397
            +D  +G   K  CHLME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  EL I  ++     +F  L RI YMA S+  W EHE+DY+LF
Sbjct:   80 DDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILF 213          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.571e-27
Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASS--DGTWVEHELDYLLFIVRD 409
            +D+ +   +K   HLM  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  EL +  + V +D+FT + +I Y + S  D  W EHE+D++L + +D
Sbjct:   34 DDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKD 168          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.056e-15
Identity = 49/127 (38.58%), Postives = 69/127 (54.33%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYL 391
            +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+   AE   V  FT      Y A+  G  +EHE D++
Sbjct:   11 DDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT------YQAAVPGDLIEHEFDHI 116          
The following BLAST results are available for this feature:
BLAST of CX294590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IDI1_PONAB2.856e-3756.83Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_MOUSE3.157e-3653.96Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_RAT4.124e-3653.24Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_MESAU7.034e-3653.96Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_PHARH4.267e-3353.19Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI2_HUMAN1.793e-3149.64Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_SCHPO3.058e-3153.79Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI1_YEAST7.050e-2851.11Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_DICDI1.571e-2749.26Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI_SERP51.056e-1538.58Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]

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Properties
Property NameValue
Genbank descriptionC05054G09SK FlavRip1 Citrus clementina cDNA clone C05054G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294590 ID=CX294590; Name=CX294590; organism=Citrus clementina; type=EST; length=427bp
GGCACGAGGGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTC
ACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGC
GTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGG
AACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATC
CTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGG
AATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGTCATTTGTGCTGAAGA
TGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACATGGCCT
CTTCTGATGGCACGTGGGTCGAGCATGAACTTGACTACTTACTTTTCATT
GTCCGAGATGCTAGCTTTACCCCAAAT
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