CX294590

Overview
NameCX294590
Unique NameCX294590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.291e-13
Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 2
Query:   47 CHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTW-VEHELDYLLFIVRDASFTPN 427
            C + E       LHRAFSV LF++   +LLQQR+  K  FPL+W NTCC HP   ES         V  AA  +L +EL + A        T +G   Y A+   T  VEHE D++L    D +  P+
Sbjct:   16 CPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAATRLAEELGVAA------GLTEVGVFRYRAADTATGRVEHEWDHVLIGTLDTTPHPD 128          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI_ERWCT (Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica GN=idi PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.202e-13
Identity = 48/134 (35.82%), Postives = 68/134 (50.75%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVI-CAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRD 409
            ND+  G   K   H+  +      LHRA +V++FNS+ +LLLQQR+  K     +W+NTCCSHP   E  L          AA R+L +E+ + CA        TP+  + Y    D   +EHEL ++ F V D
Sbjct:   12 NDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYRLQLDNGLIEHELGHVYFGVTD 123          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_AZOSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoarcus sp. (strain EbN1) GN=idi1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11
Identity = 47/140 (33.57%), Postives = 66/140 (47.14%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDEL-VICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  +G E K   H          LHRA S+F+F+S   LLLQ+R+ +K     +W+NTCCSHP  RE             AA+R+L +E+ + C  DV           +Y A      +E+E D++ F   D    PN
Sbjct:   11 NDTEIGVEGKMIAHRSGS------LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHPRPREE---------CARAARRRLREEMGIACELDVKFG-------FVYRAVLTNHLIENEFDHVFFGRHDGDPVPN 128          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI_BURM1 (Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=idi PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.515e-11
Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYL 391
            +DR +G   K   H         LLHRAFS+F+F+S   LLLQQR+  K     +W+NTCC HP  RE+         + +A +R+L +E+    E  PVD       ++Y A  +   +EHE  ++
Sbjct:   11 DDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYHSGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVD------ALVYRARFENDLIEHEFVHI 116          
BLAST of CX294590 vs. ExPASy Swiss-Prot
Match: IDI1_PHOLL (Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus luminescens subsp. laumondii GN=idi1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.831e-11
Identity = 47/139 (33.81%), Postives = 69/139 (49.64%), Query Frame = 2
Query:   11 NDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELVICAEDVPVDEFTPLGRILYMASSDGTWVEHELDYLLFIVRDASFTPN 427
            ND  VG  NK + HL     + + LHRAFS F+ NSK E+ +QQR+ +K+ +P  W+N+ CSHP   E          + +A  R+  +EL I   + P  +F  L +  Y         EHEL ++  +  D   T N
Sbjct:   10 NDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP--KF--LYKFQYKEKYKDVGYEHELCHVFVVFTDTPPTEN 130          
The following BLAST results are available for this feature:
BLAST of CX294590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IDI_NOCFA1.291e-1338.28Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]
IDI_ERWCT2.202e-1335.82Isopentenyl-diphosphate Delta-isomerase OS=Erwinia... [more]
IDI1_AZOSE2.061e-1133.57Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoar... [more]
IDI_BURM13.515e-1134.65Isopentenyl-diphosphate Delta-isomerase OS=Burkhol... [more]
IDI1_PHOLL7.831e-1133.81Isopentenyl-diphosphate Delta-isomerase 1 OS=Photo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054G09SK FlavRip1 Citrus clementina cDNA clone C05054G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294590 ID=CX294590; Name=CX294590; organism=Citrus clementina; type=EST; length=427bp
GGCACGAGGGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTC
ACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGC
GTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGG
AACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATC
CTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGG
AATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGTCATTTGTGCTGAAGA
TGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACATGGCCT
CTTCTGATGGCACGTGGGTCGAGCATGAACTTGACTACTTACTTTTCATT
GTCCGAGATGCTAGCTTTACCCCAAAT
back to top