CX294592

Overview
NameCX294592
Unique NameCX294592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP1A2_MOUSE (Cytochrome P450 1A2 OS=Mus musculus GN=Cyp1a2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 35/123 (28.46%), Postives = 57/123 (46.34%), Query Frame = 3
Query:  333 VTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRD-----PAFVGNPNEF 686
            +  D+   G ++    + W+I  L+  P + +K  EELD VVG++R     D   LP+++A + E  R     P  +P   + D  + G+ IPK   + +N W +  D       FV  P  F
Sbjct:  308 IVNDIFGAGFDTVTTAITWSILLLVTWPNVQRKIHEELDTVVGRDRQPRLSDRPQLPYLEAFILEIYRYTSFVPFTIPHSTTRDTSLNGFHIPKERCIYINQWQVNHDEKQWKDPFVFRPERF 430          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP304_DROME (Probable cytochrome P450 304a1 OS=Drosophila melanogaster GN=Cyp304a1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 61/218 (27.98%), Postives = 104/218 (47.71%), Query Frame = 3
Query:   51 EFKEMADELFILGGVLDIGDMIPWLGFL--DLQGYIKRMKVLAKKFDRLFEYELDDHNARRKGVDNYEA---KDMMDVLL-QLADDPTLEVKLERHSLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            +F+  AD+    G +L I   IPW+  +  +  GY K  +  +  F R F  +  D     K +D+YE    ++ MDV + ++   P      ++  +  V  D       +  V +   +  LM  P +L++   E+D VVG  R    +D  NLPF +A ++E +R+  + P+ VP  A ED ++ GY IPK T V+ +++    D     +P +F
Sbjct:  223 QFQRNADDY---GKMLSI---IPWIRHIWPEWSGYNKLNE--SNLFVRQFFADFVD-----KYLDSYEEGVERNFMDVYIAEMRRGPGYGFNRDQLIMGLV--DFSFPAFTAIGVQLSLLVQYLMLYPAVLRRVQNEIDEVVGCGRLPNLEDRKNLPFTEATIREGLRIETLVPSDVPHKALEDTELLGYRIPKDTIVVPSLYAFHSDARIWSDPEQF 425          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP2CD_RAT (Cytochrome P450 2C13, male-specific OS=Rattus norvegicus GN=Cyp2c13 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 49/170 (28.82%), Postives = 79/170 (46.47%), Query Frame = 3
Query:  189 LFEYELDDHNARRKGVDNYEAKDMMDVLL----QLADDPTLEVKLERHSLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            L  Y L+      + +D    +D +D  L    Q   +  +   LE   L  +  DL   G E+ + T+ +A+  LMK P +  K  EE+D V+G+ R    +D  ++P+ +A+V E  R   + P  +    + D K   Y IPKGT VL ++ ++  D     NP  F
Sbjct:  240 LKSYLLEKIKEHEESLDVSNPRDFIDYFLIERNQENANQWMNYTLEH--LAIMVTDLFFAGIETVSSTMRFALLLLMKYPHVTAKVQEEIDHVIGRHRSPCMQDRSHMPYTNAMVHEVQRYIDIGPNGLLHEVTCDTKFRNYFIPKGTAVLTSLTSVLHDSKEFPNPEMF 407          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP2B3_RAT (Cytochrome P450 2B3 OS=Rattus norvegicus GN=Cyp2b3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 44/166 (26.51%), Postives = 80/166 (48.19%), Query Frame = 3
Query:  195 EYELDDHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERH--SLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            ++ +++H A    +D    +D +D  L   +   L    E H  +L      L   GTES++ T+ +    ++K P + +K  +E+D+V+G +R     D   +P+ +A++ E  R   VSP  +P   ++D    GY +PK T V   + +   DP +   P+ F
Sbjct:  246 DHSVENHRAT---LDPNAPRDFIDTFLLHMEKEKLNHYTEFHHWNLMISVLFLFLAGTESTSNTLCYGFLLMLKYPHVAEKVQKEIDQVIGSQRVPTLDDRSKMPYTEAVIHEIQRFSDVSPMGLPCRITKDTLFRGYLLPKNTEVYFILSSALHDPQYFEQPDTF 408          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP6A1_MUSDO (Cytochrome P450 6A1 OS=Musca domestica GN=CYP6A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 54/185 (29.19%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  159 MKVLAKKFDRLFEYELDDHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLER---HSLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVG--KERWVEEKDIVNLPFIDAIVKETMRLHPVSP-TLVPRMASEDCKVAG---YDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            M+VL +   + F   + +    R+  +N    D +D++L L ++P    KL     + L A       GG E+S+ T+ +A+ EL +  +L  +  EE++ V    KE  +    ++N+P++D ++ ET+R +PV   + + R    D  V     Y +PKGT V + V  I  DP    NP EF
Sbjct:  238 MRVLPEDVHQFFMSSIKETVDYREK-NNIRRNDFLDLVLDLKNNPESISKLGGLTFNELAAQVFVFFLGGFETSSSTMGFALYELAQNQQLQDRLREEVNEVFDQFKEDNISYDALMNIPYLDQVLNETLRKYPVGVGSALTRQTLNDYVVPHNPKYVLPKGTLVFIPVLGIHYDPELYPNPEEF 421          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP2S1_HUMAN (Cytochrome P450 2S1 OS=Homo sapiens GN=CYP2S1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 45/148 (30.41%), Postives = 74/148 (50.00%), Query Frame = 3
Query:  249 AKDMMDV-LLQLA-DDPTLEVKLERHSLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            A+D++D  LL++A ++     +    ++      LL  GT + + TV + +  LMK P + K   EEL+R +G  +     D   LP+ DA++ E  RL  + P  +PR      +  GY +P+GT V   + +I  DP    +P EF
Sbjct:  265 ARDLVDAFLLKMAQEEQNPGTEFTNKNMLMTVIYLLFAGTMTVSTTVGYTLLLLMKYPHVQKWVREELNRELGAGQAPSLGDRTRLPYTDAVLHEAQRLLALVPMGIPRTLMRTTRFRGYTLPQGTEVFPLLGSILHDPNIFKHPEEF 412          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP2BC_RAT (Cytochrome P450 2B12 OS=Rattus norvegicus GN=Cyp2b12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 51/218 (23.39%), Postives = 95/218 (43.58%), Query Frame = 3
Query:   48 HEFKEMADELF---ILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDDHNARRKGVDNYEAKDMMDV-LLQLADDPTLE-VKLERHSLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            H+F  + D ++   +L G L       + GFL    +    K + K    +  Y        R  +D    +D +D  LL++  + +    +    +L      L   GTE+++ T+      ++K P + +K  +E+D+V+G  R     D   +P+ DA++ E  R   ++P  +P   ++D    GY +PK T V   + +   DP +   P+ F
Sbjct:  194 HQFLHLLDLVYKTSVLMGSLSSQVFELYSGFLKY--FPGAHKQIFKNLQEMLNYIGHIVEKHRATLDPSAPRDFIDTYLLRMEKEKSNHHTEFNHQNLVISVLSLFFAGTETTSTTLRCTFLIMLKYPHVAEKVQKEIDQVIGSHRLPTPDDRTKMPYTDAVIHEIQRFADLTPIGLPHRVTKDTVFRGYLLPKNTEVYPILSSALHDPRYFEQPDTF 409          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 43/178 (24.16%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  159 MKVLAKKFDRLFEYELDDHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQDL--LAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            M  L    +++ +  L D   RR         D + +++   +   ++       ++ V Q +  L  G E+++ T+ + +  L   P + +K  EE+D ++  +       +V + ++D +V ET+RL+P++  L  R+  +D  + G  IPKGT V++  + + RDP     P+EF
Sbjct:  244 MDFLKTSVEKIKDDRLKDKQKRRV--------DFLQLMINSQNSKEIDSHKALDDIEVVAQSIIILFAGYETTSSTLSFIMHLLATHPDVQQKLQEEIDTLLPNKELATYDTLVKMEYLDMVVNETLRLYPIAGRL-ERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTEPDEF 412          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: CP1A2_CANFA (Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 42/195 (21.54%), Postives = 87/195 (44.62%), Query Frame = 3
Query:  108 DMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDDHNARRKGVDNYEAKDMMDVLLQLADDPTL--EVKLERHSLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVEEKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            D  P L ++     ++R K   + F +  +  + +H    +  D    +D+   LL+  +  +   +  + +  +  +  D+   G ++    + W++  L+  P++ ++  +ELD V+G+ R     D   LP ++A + E  R     P  +P   ++D  + G+ IPK   V +N W +  D    G+P  F
Sbjct:  233 DFFPILQYMP-NSALQRFKNFNQTFVQSLQKIVQEHY---QDFDERSVQDITGALLKHNEKSSRASDGHIPQEKIVNLINDIFGAGFDTVTTAISWSLMYLVANPEIQRQIQKELDTVIGRARQPRLSDRPQLPLMEAFILEIFRHTSFVPFTIPHSTTKDTTLKGFYIPKECCVFINQWQVNHDQQVWGDPFAF 423          
BLAST of CX294592 vs. ExPASy Swiss-Prot
Match: C11B1_SHEEP (Cytochrome P450 11B1, mitochondrial OS=Ovis aries GN=CYP11B1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  321 SLKAVTQDLLAGGTESSAVTVEWAISELMKKPKLLKKATEELDRVVGKERWVE--EKDIVNLPFIDAIVKETMRLHPVSPTLVPRMASEDCKVAGYDIPKGTRVLVNVWTIGRDPAFVGNPNEF 686
            ++KA T DL AG  +++A  +   + EL + P++ +   +E   +V + R  E  ++    LP + A +KET+RL+PV  TL  R  S D  +  Y IP GT V V ++++GR+PA    P  +
Sbjct:  303 TIKANTIDLTAGSVDTTAFPLLMTLFELARNPEVQQALRQE--SLVAEARISENPQRATTELPLLRAALKETLRLYPVGITL-ERQVSSDLVLQNYHIPAGTLVKVLLYSLGRNPAVFARPESY 423          
The following BLAST results are available for this feature:
BLAST of CX294592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 410
Match NameE-valueIdentityDescription
CP1A2_MOUSE3.633e-1128.46Cytochrome P450 1A2 OS=Mus musculus GN=Cyp1a2 PE=1... [more]
CP304_DROME4.745e-1127.98Probable cytochrome P450 304a1 OS=Drosophila melan... [more]
CP2CD_RAT4.745e-1128.82Cytochrome P450 2C13, male-specific OS=Rattus norv... [more]
CP2B3_RAT4.745e-1126.51Cytochrome P450 2B3 OS=Rattus norvegicus GN=Cyp2b3... [more]
CP6A1_MUSDO6.198e-1129.19Cytochrome P450 6A1 OS=Musca domestica GN=CYP6A1 P... [more]
CP2S1_HUMAN6.198e-1130.41Cytochrome P450 2S1 OS=Homo sapiens GN=CYP2S1 PE=2... [more]
CP2BC_RAT6.198e-1123.39Cytochrome P450 2B12 OS=Rattus norvegicus GN=Cyp2b... [more]
CP3A6_RABIT8.094e-1124.16Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP1A2_CANFA8.094e-1121.54Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 ... [more]
C11B1_SHEEP8.094e-1133.87Cytochrome P450 11B1, mitochondrial OS=Ovis aries ... [more]

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Properties
Property NameValue
Genbank descriptionC05054H01SK FlavRip1 Citrus clementina cDNA clone C05054H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294592 ID=CX294592; Name=CX294592; organism=Citrus clementina; type=EST; length=686bp
GCCGTATGGTTTTAGGGAAAAAATACACAAATGAGATTGTGGCACGACAT
GAGTTTAAGGAAATGGCCGATGAGTTGTTTATTTTAGGCGGGGTTTTGGA
TATTGGCGATATGATTCCTTGGTTAGGGTTCTTGGATTTACAAGGTTATA
TAAAGAGAATGAAGGTTTTGGCTAAGAAATTTGACAGGTTATTTGAGTAC
GAGTTGGATGATCATAACGCTAGAAGAAAGGGGGTCGATAATTATGAGGC
TAAAGACATGATGGATGTGCTTTTGCAGCTTGCTGATGATCCTACTCTTG
AAGTTAAACTTGAAAGACATAGCCTCAAAGCTGTAACCCAGGACCTACTA
GCTGGTGGGACTGAGAGCTCAGCAGTGACAGTGGAATGGGCTATCTCTGA
ACTAATGAAAAAACCAAAACTTCTCAAAAAAGCAACCGAAGAACTAGATA
GAGTAGTCGGAAAAGAAAGATGGGTTGAAGAGAAAGATATCGTTAATCTC
CCATTCATCGACGCCATAGTTAAAGAAACAATGCGTCTACACCCGGTGTC
TCCAACACTGGTGCCAAGAATGGCTAGTGAAGATTGCAAAGTTGCCGGCT
ACGACATCCCTAAAGGCACCCGAGTCCTAGTTAATGTATGGACGATAGGG
AGAGACCCTGCTTTTGTGGGAAATCCTAATGAATTT
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