CX294598

Overview
NameCX294598
Unique NameCX294598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP2_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ACAP2 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  C DCG  DP+WAS N+G+ +C++C G+HRSLG H SKV S+TLD W  + +  M E+ GN   N +YEA + + G+ KP P    E +  +IR+KY  ++F+
Sbjct:  411 NASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCEL-GNDVINRVYEANVEKMGIKKPQPGQRQE-KEAYIRAKYVERKFV 513          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGE2_YEAST (ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae GN=AGE2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 61/155 (39.35%), Postives = 88/155 (56.77%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAP-DPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQ---------EFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQK 440
            LL    N  CADC A   P+WAS ++GVFIC+KC G+HRSLGTH+SKV SV LD W ++ +  +I+   N  AN+ YEA + + + +     +  +++ FI++KYE +         E L  S      KPSA+     S   +D  +S+NS QK
Sbjct:   14 LLRDPGNSHCADCKAQLHPRWASWSLGVFICIKCAGIHRSLGTHISKVKSVDLDTWKEEHLVKLIQFKNNLRANSYYEATLADELKQRKITDTSSLQN-FIKNKYEYKKWIGDLSSIEGLNDSTEPVLHKPSANHSLPASNARLD--QSSNSLQK 165          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP7_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 7 OS=Homo sapiens GN=AGAP7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+HRSLGT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP   S+ E + ++IRSKYE + FL P
Sbjct:  451 RGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWPVELRKVMSSI-GNDLANSIWEG-SSQGRTKPTEKSTREEKERWIRSKYEEKLFLAP 556          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP8_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 8 OS=Homo sapiens GN=AGAP8 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+H SLGT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP   S+ E + ++IRSKYE + FL P
Sbjct:  451 RGNAHCVDCETQNPKWASLNLGVLMCIECSGIHHSLGTRLSRVRSLELDDWPVELRKVMSSI-GNDLANSIWEG-SSQGQTKPSEKSTREEKERWIRSKYEEKLFLAP 556          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP2_RABIT (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Oryctolagus cuniculus GN=ACAP2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.082e-20
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  C DCG  DP+WAS N+G+ +C++C G+HRSLG H SKV S+TLD W  + +  M E+ GN   N +YEA + + G+ KP P    E +  +I++KY  ++F+
Sbjct:  411 NASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCEL-GNDVINRVYEANVEKMGIKKPQPGQRQE-KEAYIKAKYVERKFV 513          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP1_XENLA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Xenopus laevis GN=agap1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.720e-20
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            N  C DC A  P WAS N+G  +C++C G+HR+LGTH+S+V S+ LDDW  + +  M  + GN  AN+++E    +G  KP  +S  E + ++IR+KYE + FL P
Sbjct:  624 NSHCVDCDAQSPDWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPPELIKVMSAI-GNELANSVWEG-SSQGHVKPCSESPREEKERWIRAKYEQRLFLSP 727          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP6_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 6 OS=Homo sapiens GN=AGAP6 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.552e-20
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+HRSLG H+S+V S+ LDDW  +    M  +  N  AN+I+E    +G +KP   S+ E + ++IRSKYE + FL P
Sbjct:  451 RGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGPHLSRVRSLELDDWPVELRKVMSSI-VNDLANSIWEG-SSQGQTKPSEKSTREEKERWIRSKYEEKLFLAP 556          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: CTLFB_HUMAN (Putative centaurin-gamma-like family member 11P OS=Homo sapiens GN=CTGLF11P PE=5 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+H SLGT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP   S+ E + ++IRSKYE + FL P
Sbjct:  459 RGNAHCVDCETQNPKWASLNLGVLMCIECSGIHCSLGTRLSRVRSLELDDWPVELRKVMSSI-GNDLANSIWEG-SSQGQTKPSVKSTREEKERWIRSKYEKKLFLAP 564          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP9_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 OS=Homo sapiens GN=AGAP9 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.034e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+HRS GT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP   S+ E +  +IRSKYE + FL P
Sbjct:  519 RGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSFGTRLSRVRSLELDDWPVELRKVMSSI-GNELANSIWEG-SSQGQTKPSIKSTREEKEWWIRSKYEEKLFLAP 624          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGA10_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 10 OS=Homo sapiens GN=AGAP10 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.034e-19
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+HRS GT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP   S+ E +  +IRSKYE + FL P
Sbjct:  474 RGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSFGTRLSRVRSLELDDWPVELRKVMSSI-GNELANSIWEG-SSQGQTKPSIKSTREEKEWWIRSKYEEKLFLAP 579          
The following BLAST results are available for this feature:
BLAST of CX294598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
ACAP2_HUMAN9.348e-2144.76Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGE2_YEAST1.221e-2039.35ADP-ribosylation factor GTPase-activating protein ... [more]
AGAP7_HUMAN1.221e-2046.30Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP8_HUMAN2.082e-2045.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ACAP2_RABIT2.082e-2043.81Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGAP1_XENLA2.720e-2043.40Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP6_HUMAN3.552e-2045.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
CTLFB_HUMAN4.639e-2045.37Putative centaurin-gamma-like family member 11P OS... [more]
AGAP9_HUMAN1.034e-1945.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGA10_HUMAN1.034e-1945.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]

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Properties
Property NameValue
Genbank descriptionC05054H09SK FlavRip1 Citrus clementina cDNA clone C05054H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294598 ID=CX294598; Name=CX294598; organism=Citrus clementina; type=EST; length=623bp
AGGATTTATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCT
CCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAA
ATGTTGTGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGT
CTGTGACATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAA
GTTGGAGGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGA
AGGTGTTTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGT
TTATCAGGTCTAAGTATGAACTCCAAGAATTTTTGAAACCTAGCTTGCGG
ATTGCATCAGGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAA
AATTATAGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAG
GCATGGTAGAGTTTATCGGCTTATTGAAAGTCAAAGTGGTAAAAGGCATA
AATTTAGCTATCAGAGATATGATGTCAAGTGATCCTTACGTAGTTCTGCG
TCTTGGACAGCAGACCGTGCAAACGACTATAGTAAAGAGCAACTTGAATC
CAGTTTGGAATGAGGAGCTCATG
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