CX294598

Overview
NameCX294598
Unique NameCX294598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP5_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5 OS=Homo sapiens GN=AGAP5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.350e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C D    +PKWAS N+GV +C++C G+HRSLGT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP   S+ E + ++IRSKYE + FL P
Sbjct:  451 RGNAHCVDYETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWPVELRKVMSSI-GNDLANSIWEG-SSQGQTKPSVKSTREEKERWIRSKYEEKLFLAP 556          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ASAP1_HUMAN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ASAP1 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.763e-19
Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKII 407
            N IC DCG+ +P W S N+G+  C++C G+HR +G H+S++ S+ LD     E+  + +  GN+S N I EA +P    KP P S   +R ++I +KY    F + +   +S K +  L++  SR ++
Sbjct:  451 NDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELDKLGTSEL-LLAKNVGNNSFNDIMEANLPSPSPKPTPSSDMTVRKEYITAKYVDHRFSRKTCSTSSAKLNELLEAIKSRDLL 577          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ASAP1_RAT (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Rattus norvegicus GN=Asap1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKII 407
            N IC DCG+ +P W S N+G+  C++C G+HR +G H+S++ S+ LD     E+  + +  GN+S N I EA +P    KP P S   +R ++I +KY    F + +   +S K +  L++  SR ++
Sbjct:  463 NDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELDKLGTSEL-LLAKNVGNNSFNDIMEANLPSPSPKPTPSSDMTVRKEYITAKYVDHRFSRKTCASSSAKLNELLEAIKSRDLL 589          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ASAP1_MOUSE (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Asap1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKII 407
            N IC DCG+ +P W S N+G+  C++C G+HR +G H+S++ S+ LD     E+  + +  GN+S N I EA +P    KP P S   +R ++I +KY    F + +   +S K +  L++  SR ++
Sbjct:  466 NDICCDCGSSEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELDKLGTSEL-LLAKNVGNNSFNDIMEANLPSPSPKPTPSSDMTVRKEYITAKYVDHRFSRKTCASSSAKLNELLEAIKSRDLL 592          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ASAP1_BOVIN (Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ASAP1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 44/128 (34.38%), Postives = 74/128 (57.81%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKII 407
            N +C DCG+ +P W S N+G+  C++C G+HR +G H+S++ S+ LD     E+  + +  GN+S N I EA +P    KP P S   +R ++I +KY    F + +   +S K +  L++  SR ++
Sbjct:  454 NDVCCDCGSAEPTWLSTNLGILTCIECSGIHREMGVHISRIQSLELDKLGTSEL-LLAKNVGNNSFNDIMEANLPSPSPKPTPSSDMTVRKEYITAKYVDHRFSRKTCSSSSAKLNELLEAIKSRDLL 580          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ADAP2_HUMAN (Arf-GAP with dual PH domain-containing protein 2 OS=Homo sapiens GN=ADAP2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.129e-19
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  CADCGA DP WAS  +G+FICL CCGVHR+    +S+V SV LD W D  V+ MI   GN    A +EA +P     P  +    ++ ++IR+KYE +EF+
Sbjct:   22 NAHCADCGAADPDWASYKLGIFICLNCCGVHRNF-PDISRVKSVRLDFWDDSIVEFMIH-NGNLRVKAKFEARVPAFYYIPQANDCLVLKEQWIRAKYERREFM 123          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ADAP2_RAT (Arf-GAP with dual PH domain-containing protein 2 OS=Rattus norvegicus GN=Adap2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 50/104 (48.08%), Postives = 62/104 (59.62%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  CADCGA DP WAS  +GVFICL C GVHR+    +SKV SV LD W D  V+ M    GN S  A +EA +P     P       ++ ++IR+KYE QEF+
Sbjct:   22 NGHCADCGAADPDWASYKLGVFICLHCSGVHRNF-PDISKVKSVRLDFWDDSMVEFMTH-NGNLSVKAKFEARVPTFYYVPQASDCLVLKEQWIRAKYERQEFM 123          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: YIQ9_SCHPO (Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe GN=SPAC824.09c PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAPD-PKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            LL +  N++CADC   + P+WAS N+GVFIC++C GVHRSLG HVS+V SV LD W+D++ + M    GN  AN  +EA +  G       S  +I + FI++KYE ++++
Sbjct:   19 LLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR-WGNERANLYWEAKLAGG----HVPSDSKI-ATFIKTKYEFKKWV 123          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: GIT2_MOUSE (ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYE------AFIPEGVSKPGP-DSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTN 428
            R + +CADC  PDP WAS N G FIC +CC VHRSLG H+S+V  +    W    +  M+E   N+ AN+I+E      A I  G  K  P D  H  +++FIR+KY++  F+    R+   +  +      S+++  S R+ N
Sbjct:    6 RSSDVCADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQ-MVETLYNNGANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVH---RLPCREDDSVTAKDLSKQLHSSVRTGN 145          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: GIT2_HUMAN (ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYE------AFIPEGVSKPGP-DSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTN 428
            R + +CADC  PDP WAS N G F+C +CC VHRSLG H+S+V  +    W    +  M+E   N+ AN+I+E      A I  G  K  P D  H  +++FIR+KY++  F+    R+      +      S+++  S R+ N
Sbjct:    6 RSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLKHTPWPPTLLQ-MVETLYNNGANSIWEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVH---RLPCRDDDSVTAKDLSKQLHSSVRTGN 145          
The following BLAST results are available for this feature:
BLAST of CX294598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
AGAP5_HUMAN1.350e-1945.37Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ASAP1_HUMAN1.763e-1935.16Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_RAT2.302e-1935.16Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_MOUSE2.302e-1935.16Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ASAP1_BOVIN3.007e-1934.38Arf-GAP with SH3 domain, ANK repeat and PH domain-... [more]
ADAP2_HUMAN5.129e-1946.15Arf-GAP with dual PH domain-containing protein 2 O... [more]
ADAP2_RAT1.143e-1848.08Arf-GAP with dual PH domain-containing protein 2 O... [more]
YIQ9_SCHPO1.492e-1845.05Uncharacterized protein C824.09c OS=Schizosaccharo... [more]
GIT2_MOUSE2.546e-1836.81ARF GTPase-activating protein GIT2 OS=Mus musculus... [more]
GIT2_HUMAN3.325e-1836.11ARF GTPase-activating protein GIT2 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC05054H09SK FlavRip1 Citrus clementina cDNA clone C05054H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294598 ID=CX294598; Name=CX294598; organism=Citrus clementina; type=EST; length=623bp
AGGATTTATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCT
CCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAA
ATGTTGTGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGT
CTGTGACATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAA
GTTGGAGGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGA
AGGTGTTTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGT
TTATCAGGTCTAAGTATGAACTCCAAGAATTTTTGAAACCTAGCTTGCGG
ATTGCATCAGGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAA
AATTATAGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAG
GCATGGTAGAGTTTATCGGCTTATTGAAAGTCAAAGTGGTAAAAGGCATA
AATTTAGCTATCAGAGATATGATGTCAAGTGATCCTTACGTAGTTCTGCG
TCTTGGACAGCAGACCGTGCAAACGACTATAGTAAAGAGCAACTTGAATC
CAGTTTGGAATGAGGAGCTCATG
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