CX294598

Overview
NameCX294598
Unique NameCX294598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGD9_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.665e-15
Identity = 49/154 (31.82%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   21 DNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAF-------IPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL-RIASGKPSASLQSSFSRKIIDSFRSTNSSQKKDVGMV 458
            +N++C DC A +P WAS   G+F+C+ C  VHRSLG H+S V S  LD WS +++  M+  GGN+ A   ++         I    +    D   +  +K + +K   +E + PSL  +A+ +P  S ++ F+     S     SS K++  +V
Sbjct:   21 ENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMM-FGGNNRAQVFFKQHGWNDGGKIEAKYTSRAADMYRQTLAKEV-AKAMAEETVLPSLSSVATSQPVESSENGFT-----SESPKESSLKQEAAVV 167          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARAP2_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=ARAP2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 48/110 (43.64%), Postives = 62/110 (56.36%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD--WSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL 347
            NR CADC APDP WAS N+ V IC KC G HRSLG   SKV S+ +D   WS++ ++  I + GN  AN  +   + +   +   DS  E R  FI  KY+  +F K  L
Sbjct:  697 NRSCADCKAPDPDWASINLCVVICKKCAGQHRSLGPKDSKVRSLKMDASIWSNELIELFIVI-GNKRANDFWAGNLQKD-EELHMDSPVEKRKNFITQKYKEGKFRKTLL 804          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARFG2_XENTR (ADP-ribosylation factor GTPase-activating protein 2 OS=Xenopus tropicalis GN=arfgap2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWSDDEVDAMIEVGGNSSANAIY 233
            N+ C DCGA +P WAS   GVF+C+ C GVHRSLG H+S + S  LD +WS  ++  M +VGGN+SANA +
Sbjct:   23 NKSCFDCGAKNPSWASIPYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASANAFF 92          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARFG1_RAT (ADP-ribosylation factor GTPase-activating protein 1 OS=Rattus norvegicus GN=Arfgap1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:   15 QRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEA 239
            Q +N +C +CGA +P+W S   G++ICL+C G HR LG H+S V SVT+D W D E++ M + GGN+      EA
Sbjct:   16 QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKFREFLEA 89          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARAP1_HUMAN (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ARAP1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD--WSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKY 317
            NR CADCGAP P WAS N+ V IC +C G HR LG  VSKV S+ +D   W++  ++  +++ GN + N  + A +P   +   P SS   R   + +KY
Sbjct:  547 NRFCADCGAPQPDWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRKVWTETLIELFLQL-GNGAGNRFWAANVPPSEALQ-PSSSPSTRRCHLEAKY 644          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARFG1_HUMAN (ADP-ribosylation factor GTPase-activating protein 1 OS=Homo sapiens GN=ARFGAP1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.230e-14
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEA 239
            ++ +Q +N +C +CGA +P+W S   G++ICL+C G HR LG H+S V SVT+D W D E++ M + GGN+      E+
Sbjct:   12 EVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKFREFLES 89          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: GCS1_YEAST (ADP-ribosylation factor GTPase-activating protein GCS1 OS=Saccharomyces cerevisiae GN=GCS1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGN 212
            N+ C DCGAP+P+WA+   G FICL+C G+HR LG H+S V S+T+D +  +E+  M E GGN
Sbjct:   23 NKKCMDCGAPNPQWATPKFGAFICLECAGIHRGLGVHISFVRSITMDQFKPEELLRM-EKGGN 84          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: CSX2_SCHPO (Protein csx2 OS=Schizosaccharomyces pombe GN=csx2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 45/127 (35.43%), Postives = 70/127 (55.12%), Query Frame = 3
Query:   12 LQRDNRICADCGAPDP-KWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSS 389
            +   ++ CADC      +W + N  V +C+ C G+HRSLGTH++K+ S+TLD ++ + VD ++   GNS  N IYE  I +   K     + E R +F++ KY  + F+K S    S  P+  L  S
Sbjct:  679 MHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIRSLTLDKFNPETVD-LLYATGNSFVNEIYEGGITDWKIK--NFENQERRVQFVKDKYLYKRFIKSSF---SHDPNTGLLES 799          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARAP2_MOUSE (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Arap2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD--WSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSL 347
            NR CADC APDP WAS N+ V IC KC G HRSLG    KV S+ +D   WS++ ++  I + GN  AN  +   + +   +   DS  E R  FI  KY+  +F K  L
Sbjct:  695 NRSCADCKAPDPDWASINLCVVICKKCAGQHRSLGPKDCKVRSLKMDASIWSNELIELFIVI-GNKRANDFWAGNLQKD-EELQVDSPVEKRKNFITQKYKEGKFRKTLL 802          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARFG1_MOUSE (ADP-ribosylation factor GTPase-activating protein 1 OS=Mus musculus GN=Arfgap1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.968e-14
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3
Query:   15 QRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYE 236
            Q +N +C +CGA +P+W S   G++ICL+C G HR LG H+S V SVT+D W D E++ M + GGN+      E
Sbjct:   16 QDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKM-KAGGNAKFREFLE 88          
The following BLAST results are available for this feature:
BLAST of CX294598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
AGD9_ARATH7.665e-1531.82Probable ADP-ribosylation factor GTPase-activating... [more]
ARAP2_HUMAN1.001e-1443.64Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
ARFG2_XENTR1.708e-1453.52ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG1_RAT1.708e-1446.67ADP-ribosylation factor GTPase-activating protein ... [more]
ARAP1_HUMAN1.708e-1441.00Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
ARFG1_HUMAN2.230e-1443.04ADP-ribosylation factor GTPase-activating protein ... [more]
GCS1_YEAST3.804e-1452.38ADP-ribosylation factor GTPase-activating protein ... [more]
CSX2_SCHPO3.804e-1435.43Protein csx2 OS=Schizosaccharomyces pombe GN=csx2 ... [more]
ARAP2_MOUSE3.804e-1442.73Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
ARFG1_MOUSE4.968e-1445.95ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionC05054H09SK FlavRip1 Citrus clementina cDNA clone C05054H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294598 ID=CX294598; Name=CX294598; organism=Citrus clementina; type=EST; length=623bp
AGGATTTATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCT
CCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAA
ATGTTGTGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGT
CTGTGACATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAA
GTTGGAGGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGA
AGGTGTTTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGT
TTATCAGGTCTAAGTATGAACTCCAAGAATTTTTGAAACCTAGCTTGCGG
ATTGCATCAGGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAA
AATTATAGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAG
GCATGGTAGAGTTTATCGGCTTATTGAAAGTCAAAGTGGTAAAAGGCATA
AATTTAGCTATCAGAGATATGATGTCAAGTGATCCTTACGTAGTTCTGCG
TCTTGGACAGCAGACCGTGCAAACGACTATAGTAAAGAGCAACTTGAATC
CAGTTTGGAATGAGGAGCTCATG
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