CX294598

Overview
NameCX294598
Unique NameCX294598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARFG3_PONAB (ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWSDDEVDAMIEVGGNSSANAIY 233
            N++C DCGA +P WAS   GVF+C+ C G HRSLG H+S + S  LD +WS  ++  M +VGGN++A++ +
Sbjct:   22 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNANASSFF 91          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARFG3_MACFA (ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWSDDEVDAMIEVGGNSSANAIY 233
            N++C DCGA +P WAS   GVF+C+ C G HRSLG H+S + S  LD +WS  ++  M +VGGN++A++ +
Sbjct:   22 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNANASSFF 91          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARFG3_BOVIN (ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.466e-13
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWSDDEVDAMIEVGGNSSANAIY 233
            N++C DCGA +P WAS   GVF+C+ C G HRSLG H+S + S  LD +WS  ++  M +VGGN++A++ +
Sbjct:   22 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNANASSFF 91          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: YDBH_SCHPO (Uncharacterized protein C22E12.17c OS=Schizosaccharomyces pombe GN=SPAC22E12.17c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   15 QRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKV---LSVTLDDWSDDEVDAMIEVGGNSSANAIYE 236
            QRDN++C DCGA +P W+S   G+++CL C   HR++G H+S V    S  LD W+  ++  M  VGGN +A   ++
Sbjct:   18 QRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRSTVLDSWTYAQLRVM-RVGGNENARNYFK 93          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ARAP1_MOUSE (Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Arap1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.174e-13
Identity = 42/105 (40.00%), Postives = 56/105 (53.33%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD--WSDDEVDAMIEVGGNSSANAIYEAFIP-----EGVSKPGPDSSHEIRSKFIRSKY 317
            NR CADCGA  P WAS N+ V IC +C G HR LG  VSKV S+ +D   W++  +   + + GN   N  + A +P     E  S PG    H + +K+   KY
Sbjct:  549 NRFCADCGAAQPDWASINLCVVICKRCAGEHRGLGAGVSKVRSLKMDRKVWTEALIQLFLHL-GNGPGNHFWAANVPPSEALEPSSSPGARRYH-LEAKYREGKY 651          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: YQP4_CAEEL (Uncharacterized protein F07F6.4 OS=Caenorhabditis elegans GN=F07F6.4 PE=4 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.726e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLD-DWSDDEVDAMIEVGGNSSANAIYEA 239
            N++C DCGA +P W +   GVF+C+ C  VHR+LG H++ V S  LD +W+  ++ AM ++GGN +AN  ++A
Sbjct:   25 NKLCFDCGARNPTWCTVTYGVFLCIDCSAVHRNLGVHLTFVRSTNLDTNWTWLQLRAM-QLGGNGNANQFFKA 96          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: GLO3_YEAST (ADP-ribosylation factor GTPase-activating protein GLO3 OS=Saccharomyces cerevisiae GN=GLO3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.308e-11
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 3
Query:   21 DNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIY 233
            +NR+C DCG  +P W S   GV +C++C  VHR++G H++ V S TLD W+ + +    ++GGN  A   +
Sbjct:   27 ENRVCFDCGNKNPTWTSVPFGVMLCIQCSAVHRNMGVHITFVKSSTLDKWTINNL-RRFKLGGNHKARDFF 96          
The following BLAST results are available for this feature:
BLAST of CX294598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
ARFG3_PONAB2.466e-1347.89ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_MACFA2.466e-1347.89ADP-ribosylation factor GTPase-activating protein ... [more]
ARFG3_BOVIN2.466e-1347.89ADP-ribosylation factor GTPase-activating protein ... [more]
YDBH_SCHPO7.174e-1341.56Uncharacterized protein C22E12.17c OS=Schizosaccha... [more]
ARAP1_MOUSE7.174e-1340.00Arf-GAP with Rho-GAP domain, ANK repeat and PH dom... [more]
YQP4_CAEEL2.726e-1243.84Uncharacterized protein F07F6.4 OS=Caenorhabditis ... [more]
GLO3_YEAST2.308e-1139.44ADP-ribosylation factor GTPase-activating protein ... [more]

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Properties
Property NameValue
Genbank descriptionC05054H09SK FlavRip1 Citrus clementina cDNA clone C05054H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294598 ID=CX294598; Name=CX294598; organism=Citrus clementina; type=EST; length=623bp
AGGATTTATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCT
CCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAA
ATGTTGTGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGT
CTGTGACATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAA
GTTGGAGGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGA
AGGTGTTTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGT
TTATCAGGTCTAAGTATGAACTCCAAGAATTTTTGAAACCTAGCTTGCGG
ATTGCATCAGGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAA
AATTATAGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAG
GCATGGTAGAGTTTATCGGCTTATTGAAAGTCAAAGTGGTAAAAGGCATA
AATTTAGCTATCAGAGATATGATGTCAAGTGATCCTTACGTAGTTCTGCG
TCTTGGACAGCAGACCGTGCAAACGACTATAGTAAAGAGCAACTTGAATC
CAGTTTGGAATGAGGAGCTCATG
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