CX294599

Overview
NameCX294599
Unique NameCX294599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:518..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ N+GK  A A++ L+SQ  G +TIA+TVFG+NP I P+ L +AFQLD  +VK+LQ KF
Sbjct:  158 IHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ N+GK  A A++ L+SQ  G +TIA+TVFG+NP I P+ L +AFQLD  +VK+LQ KF
Sbjct:  158 IHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQAKF 219          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.273e-14
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ NIGK  A A+++L+SQ PG + I +T+FG+ P I+P+ L KAFQLDPK++  LQ KF
Sbjct:  161 IHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAFQLDPKVIIQLQKKF 222          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.053e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            +HFQFN G T+A A  AL+SQ PG +T+A+ VFG+ PSI  D L KAFQ++  +V  +Q KF
Sbjct:  162 VHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGSKPSITDDILAKAFQVEKTVVDQIQAKF 223          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.375e-12
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQFN+G T A A +AL+SQ  G +TIA+T+FG+ P ++P+ L +AFQ+D   V++LQ +F
Sbjct:  161 IHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMDVNAVRNLQARF 222          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.346e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            +HFQFN G  NA A +AL+SQ PG +T+ + VFG+ PSI+ D L KAFQ+D  I+  +Q +F
Sbjct:  162 VHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGSKPSISDDILAKAFQVDKNIIDRIQAQF 223          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.164e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQ N+ +T A A++   SQ PG + IAD VFG+NPSI  + L KAFQLD K+V+ L   F
Sbjct:  161 IHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVF 222          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            IHFQFN G  +  A +AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++ KIV  +Q +F
Sbjct:  155 IHFQFNYGTKDVIALAALSSQNPGVITIANAVFGSKPFISDDILAKAFQVEKKIVDRIQAQF 216          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.778e-11
Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 2
Query:    2 IHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 187
            +HFQ N G T+A A +A NSQ PG  +IADT+FGA P +  D L +AFQ+D  +V+ +++KF
Sbjct:  157 VHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIKSKF 218          
BLAST of CX294599 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.855e-11
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    2 IHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 199
            IHFQFN      AAA  AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D K V  LQ +F   N
Sbjct:  161 IHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
The following BLAST results are available for this feature:
BLAST of CX294599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GL120_ARATH2.506e-1458.06Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH2.506e-1458.06Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL112_ARATH3.273e-1456.45Putative germin-like protein subfamily 1 member 12... [more]
GL23_ORYSJ1.053e-1253.23Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL18_ARATH1.375e-1251.61Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL22_ORYSJ2.346e-1251.61Putative germin-like protein 2-2 OS=Oryza sativa s... [more]
GL16_ARATH1.164e-1153.23Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL21_ORYSJ1.520e-1153.23Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL32_ORYSJ5.778e-1150.00Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL123_ORYSJ9.855e-1155.22Putative germin-like protein 12-3 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC05054H10SK FlavRip1 Citrus clementina cDNA clone C05054H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294599 ID=CX294599; Name=CX294599; organism=Citrus clementina; type=EST; length=384bp
GATTCACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTG
CTCTAAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTT
GGAGCCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTT
GGACCCAAAGATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATT
AGGAGAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGTGGC
TGTATTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGA
GGTCTCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACAT
AATTGTTATTGTTTTTAAAAAAAAAAAAAAAAAA
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