CX294715

Overview
NameCX294715
Unique NameCX294715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6637 contig Ccv1_Contig6637:8..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.448e-21
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 3
Query:  153 SNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDK 482
            S  P      +  A A    D KE P ++VF  D+PG+K  ++KV+VED NVL ISG+R RE+E+    + R+ER  G+FMRKF LPENA V+ + A  ++GVLTVTV K
Sbjct:   38 STVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPK 147          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.448e-21
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 3
Query:  153 SNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDKLP 488
            +NAP      D  A      D +E P ++VF  D+PGL+  ++KV+VED N+L ISGER  E E+   K+ R+ER  GKF R+F LPENA +E I A  ++GVL+VTV K+P
Sbjct:   37 ANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVP 144          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  153 SNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDKL 485
            +NAP +    D  A      D +E P ++VF  D+PGLK  ++KV+VED N+L ISGER  E E+    + R+ER  GKFMR+F LPENA VE + A  ++GVL+VTV K+
Sbjct:   36 TNAPAK----DVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKV 142          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  207 PADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLI-------SGERKREEEKDGAKYVRMERRVGK--FMRKFVLPENANVEAISAVCQDGVLTVTVDKLPP 491
            P D+ E P  Y F++D+PGL   DI+V +E+D VL++       +G+RKREEE+   KY+R+ERR     F RKF LPE+A+   ISA C++GVLTVTV K PP
Sbjct:   56 PVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPP 159          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 52/97 (53.61%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  192 AMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDK 482
            A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  G FMR+F LPENA VE + A  ++GVLTVTV K
Sbjct:   42 AFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPK 138          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.502e-21
Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = 3
Query:  213 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDKL 485
            D KE P  +V +VD+PGLK  DIK++VE++ VL +SGERK+EE+K G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+ KL
Sbjct:   78 DWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTLHKL 168          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.502e-21
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 3
Query:  147 KSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDK 482
            K  + PT +   +  A   T  D KE   ++V   D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R++R  GKFMR+F LPENA VE + A  ++GVLTVT+ K
Sbjct:   28 KDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPK 139          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  183 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDK 482
            +  A A T  D KE P ++VF  D+PGLK  ++KV+VE+D VL ISGER  E+E     + R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV K
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPK 139          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 45/100 (45.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:  192 AMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDKLPP 491
            A++    D KE    +  ++D+PGLK  ++K++VE++ VL +SGERKREEEK G ++ R+ER  GKF R+F LP+N ++E++ A  ++GVLT+ + KL P
Sbjct:   67 ALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSP 166          
BLAST of CX294715 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 48/102 (47.06%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  180 RDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDKL 485
            ++  A   T  D KE P ++VF  D+PGLK  ++KV++E+  VL ISGER +E+E+   K+ R+ER  GKF+R+F LPENA V+ + A   +GV+TVTV K+
Sbjct:   42 KETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKV 143          
The following BLAST results are available for this feature:
BLAST of CX294715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
HSP11_CHERU1.448e-2148.1818.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17C_ARATH1.448e-2147.3217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP17_ARATH1.891e-2147.7517.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS186_ORYSJ1.891e-2150.0018.6 kDa class III heat shock protein OS=Oryza sat... [more]
HSP13_SOYBN4.213e-2153.6117.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP41_PEA5.502e-2150.5522.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP15_SOYBN5.502e-2146.4317.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE7.186e-2151.0017.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP22_ARATH1.601e-2045.0022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP11_DAUCA1.601e-2047.0617.8 kDa class I heat shock protein OS=Daucus caro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055A12SK FlavSen1 Citrus clementina cDNA clone C05055A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294715 ID=CX294715; Name=CX294715; organism=Citrus clementina; type=EST; length=491bp
GAATCCTCATTTGGCAGTAGCAAACATCAACAACAGCTAATACTCGCAAA
AGAATGGATTTCAGAATCATGGGTTTGGACTCATCGCCACTCTTTTCAAC
TCTGCAGCACATGATGGAGATGGGGGCGGACGACTCCGCTGACAACAAGT
CATCCAACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGGCAATGGCG
GCGACGCCTGCGGACGTGAAGGAGTATCCGAACTCGTACGTGTTCATCGT
CGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAGGACG
ACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAAAGAT
GGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGAGGAA
ATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTGTGTC
AGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCG
back to top