CX294717

Overview
NameCX294717
Unique NameCX294717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_LISW6 (10 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 42/91 (46.15%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV-GKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGI 523
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G  +LI+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_CHLT3 (10 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.108e-17
Identity = 43/93 (46.24%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGIL 526
            ++KPL DRV+VK    EEKT GG+++P + + KPQ GEVVAVG GK       + + V+ G +V+Y KY+GTE+  +G  +LI+RE D+  I+
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTEVTVDGEDYLIMRESDIFAII 94          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_LEUCK (10 kDa chaperonin OS=Leuconostoc citreum (strain KM20) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.448e-17
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +KPLGDRV++++    E+T GGI L + A+ KP  G+VVAVG G  +   +K D++VK G QV++ KYAG E+ F GA +L + E D+V I+E
Sbjct:    2 LKPLGDRVIIEVTEAAEQTVGGIVLANNAKDKPVTGKVVAVGSGYVLNDGSKQDLTVKSGDQVLFDKYAGQEVSFEGADYLALHEKDIVAIVE 94          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_CHLTE (10 kDa chaperonin OS=Chlorobium tepidum GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.448e-17
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGIL 526
            ++KPL DRV+VK    EEKT GG+++P   + KP  GEVVAVG GK     + + + VK G +V+Y KY+GTE+   G  +LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGPGKVSDAGQVVAMQVKAGDKVLYGKYSGTEVHVEGEDYLIMRESDIFAIL 94          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_LACZE (10 kDa chaperonin OS=Lactobacillus zeae GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGI 523
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G  +L++ E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_LACS1 (10 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 38/93 (40.86%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +KPLGDRV++K++  EE++ GGI + S A+ KP  GEV+AVG G+ +    +++  VK G  V++ KYAG+E+++ G  +L++RE+D++ +++
Sbjct:    2 LKPLGDRVVLKVQKEEEQSIGGIVIASNAKEKPTTGEVIAVGNGRILDNGQRVEPEVKVGQSVVFDKYAGSEVKYEGEEYLVIRENDIIAVID 94          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_LACCB (10 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGI 523
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G  +L++ E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_LACC3 (10 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  254 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGI 523
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G  +L++ E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_DESOH (10 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  257 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +PL DR+LVK    E KT GGI +P  A+ KP  G+V+AVG G+     KL  + VK G +V++ KY GTE++ +G  +LI+REDD++GILE
Sbjct:    4 RPLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVKMDGQEYLIMREDDILGILE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_THET8 (10 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groS PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  248 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            T IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +    ++ + VK G  V+++KY GTE+E +G  ++I+ E D++ +L+
Sbjct:    7 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101          
The following BLAST results are available for this feature:
BLAST of CX294717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_LISW61.108e-1746.1510 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH10_CHLT31.108e-1746.2410 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH10_LEUCK1.448e-1747.3110 kDa chaperonin OS=Leuconostoc citreum (strain K... [more]
CH10_CHLTE1.448e-1747.3110 kDa chaperonin OS=Chlorobium tepidum GN=groS PE... [more]
CH10_LACZE1.891e-1748.3510 kDa chaperonin OS=Lactobacillus zeae GN=groS PE... [more]
CH10_LACS11.891e-1740.8610 kDa chaperonin OS=Lactobacillus salivarius subs... [more]
CH10_LACCB1.891e-1748.3510 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH10_LACC31.891e-1748.3510 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH10_DESOH1.891e-1748.9110 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]
CH10_THET82.469e-1746.3210 kDa chaperonin OS=Thermus thermophilus (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055B03SK FlavSen1 Citrus clementina cDNA clone C05055B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294717 ID=CX294717; Name=CX294717; organism=Citrus clementina; type=EST; length=585bp
TATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCT
CTCGCTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCA
TCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACC
GTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTT
TCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACT
TCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGA
GGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGC
CTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAG
GCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAA
GTATGCAGGGACTGAGTTGGAGTTCAACGGCGCANATCATCTCATAGTGA
GGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTT
AAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
back to top