CX294717

Overview
NameCX294717
Unique NameCX294717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_RHOCS (10 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.501e-17
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  257 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +PL DRV+VK    E+KT GGI +P  A+ KPQ GE++AVG G      KL  + VK G +V++ K++GTE++ +G  +LI++E D++G+LE
Sbjct:    4 RPLHDRVVVKRVESEQKTAGGIIIPDTAKEKPQEGEIIAVGSGARDESGKLIALDVKVGDRVLFGKWSGTEVKIDGVEYLIMKESDIMGVLE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_GEOSM (10 kDa chaperonin OS=Geobacter sp. (strain M21) GN=groS PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +++PL DR++VK       T GG+++P  A+ KPQ GEVVAVG GK     K+  I +K G +V++ KYAG+E++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGDDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVVE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH101_BRAJA (10 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN=groS1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.185e-17
Identity = 41/92 (44.57%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  257 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +PL DRVLV+    EEKT GGI +P  A+ KPQ GE++A G G    + +L  I VKPG +V++ K++GTE++ +G  +LI++E D++G+++
Sbjct:    4 RPLHDRVLVRRIDAEEKTAGGIIIPDTAKEKPQEGEIIAAGSGGRNEQGQLIPIDVKPGDRVLFGKWSGTEVKIDGQDYLIMKESDLLGVVD 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  248 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGIL 526
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_NEIGO (10 kDa chaperonin OS=Neisseria gonorrhoeae GN=groS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK--AKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +I+PL DRV+VK    EEKT  GI LP AA  KP  GEV+AVG GK +GK  A+  + VK G ++I+ KY+G  ++ +G   L++RE+D+ GI+E
Sbjct:    2 TIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVGAGK-IGKDGARRPLDVKAGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_NEIG1 (10 kDa chaperonin OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=groS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK--AKLDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +I+PL DRV+VK    EEKT  GI LP AA  KP  GEV+AVG GK +GK  A+  + VK G ++I+ KY+G  ++ +G   L++RE+D+ GI+E
Sbjct:    2 TIRPLHDRVVVKRLEAEEKTASGIVLPGAAAEKPDMGEVIAVGAGK-IGKDGARRPLDVKAGDKIIFGKYSGQTVKADGEELLVMREEDIFGIVE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_HYDS0 (10 kDa chaperonin OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=groS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 40/94 (42.55%), Postives = 68/94 (72.34%), Query Frame = 2
Query:  254 IKPLGDRVLVK-IKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +KP+ D+++VK ++  E+KT  GI +P  A+ KPQ GEV+AVG GK +   ++  ++V  G +V+++KYAGTE+E +G  +L++ ED+V+ I+E
Sbjct:    3 LKPIYDKIVVKRMEEKEQKTPSGIIIPDTAKEKPQVGEVIAVGNGKVLNNGEIRPLAVNVGDKVLFNKYAGTEVELDGEKYLVMAEDEVLAIIE 96          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_GEOBB (10 kDa chaperonin OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=groS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +++PL DR++VK       T GG+++P  A+ KPQ GEVVAVG GK     K+  I +K G +V++ KYAG+E++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRIIVKRVEEATMTAGGLYIPETAKEKPQQGEVVAVGNGKRGEDGKVYPIDLKVGDKVLFGKYAGSEVKLEGEDFLIMREDDILGVVE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_DESAH (10 kDa chaperonin OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=groS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 2
Query:  251 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            S++PL DR+LV+     EKT GGI +P  A+ KP  G+VVA G G+     KL  + +K G  +++SKY GTE++ +G  +LI+R+DDV+G++E
Sbjct:    2 SLRPLQDRILVERVQETEKTKGGIIIPDTAKEKPAEGKVVASGNGRVGEDGKLIPMDLKVGDTILFSKYGGTEVKIDGTDYLIMRQDDVLGVIE 95          
BLAST of CX294717 vs. ExPASy Swiss-Prot
Match: CH10_CAUCR (10 kDa chaperonin OS=Caulobacter crescentus GN=groS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.383e-17
Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 2
Query:  257 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAXHLIVREDDVVGILE 529
            +PLGDRVLVK    E KT GGI +P  A+ KPQ GEVVAVG G    K   + + VK G ++++ K++GTE++ +G   LI++E DV+G++E
Sbjct:    4 RPLGDRVLVKRVEEETKTKGGIIIPDTAKEKPQEGEVVAVGPGARNDKGDVVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGVVE 95          
The following BLAST results are available for this feature:
BLAST of CX294717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_RHOCS5.501e-1745.6510 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH10_GEOSM7.185e-1744.6810 kDa chaperonin OS=Geobacter sp. (strain M21) GN... [more]
CH101_BRAJA7.185e-1744.5710 kDa chaperonin 1 OS=Bradyrhizobium japonicum GN... [more]
CH10_PROMS9.383e-1742.5510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_NEIGO9.383e-1748.4210 kDa chaperonin OS=Neisseria gonorrhoeae GN=groS... [more]
CH10_NEIG19.383e-1748.4210 kDa chaperonin OS=Neisseria gonorrhoeae (strain... [more]
CH10_HYDS09.383e-1742.5510 kDa chaperonin OS=Hydrogenobaculum sp. (strain ... [more]
CH10_GEOBB9.383e-1744.6810 kDa chaperonin OS=Geobacter bemidjiensis (strai... [more]
CH10_DESAH9.383e-1744.6810 kDa chaperonin OS=Desulfobacterium autotrophicu... [more]
CH10_CAUCR9.383e-1747.8310 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055B03SK FlavSen1 Citrus clementina cDNA clone C05055B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294717 ID=CX294717; Name=CX294717; organism=Citrus clementina; type=EST; length=585bp
TATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCT
CTCGCTCTCTCTGCATCTGCAAGATGGCGACAGCTCAGCTAACAGCGTCA
TCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACC
GTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTT
TCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACT
TCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGA
GGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGC
CTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAG
GCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAA
GTATGCAGGGACTGAGTTGGAGTTCAACGGCGCANATCATCTCATAGTGA
GGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTT
AAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
back to top