CX294722

Overview
NameCX294722
Unique NameCX294722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:823..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.755e-16
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSV-EMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNV 548
            GT+  G++E G +K    V   P   T EV ++ +   E +  ++ GD V   V+     D++ G+V +++K+ P      F +Q+ I+  P  +  GY+ V+  HT+   V F++L+ K+D+ + K  +K P F   G   + ++    P+ +E F DY  +GRF +RD   TVAV  +  +
Sbjct:  481 GTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 44/179 (24.58%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   18 GRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEK 554
            G++E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A  V+  +++
Sbjct:  507 GKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIKE 684          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 44/179 (24.58%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   18 GRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEK 554
            G++E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A  V+  +++
Sbjct:  507 GKIEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEMKE 684          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 43/179 (24.02%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   18 GRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEK 554
            G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA  V+  +++
Sbjct:  502 GKIEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 679          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 42/179 (23.46%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   18 GRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEK 554
            G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F +++++ N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA  V+  +++
Sbjct:  505 GKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 682          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 42/178 (23.60%), Postives = 86/178 (48.31%), Query Frame = 3
Query:   18 GRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVE 551
            G++E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    T+A  V+  ++
Sbjct:  509 GKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKE-PIKVCTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIK 685          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 44/179 (24.58%), Postives = 90/179 (50.28%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKR---GFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAV 530
            G +  GRVE G + P + +T  P+G+  E +SVE+H++       G+N G  +K   + ++ +   G V S + ++ A        + I++  P  +  GY P ++    H   + +++++K+    GKE+ + P+ + NG+     ++  KP+V++    +  L +FA+ D    V +
Sbjct:  294 GKIFTGRVEYGTITPNLKITIQPAGVVGETRSVEIHNKPRSMIPCGENCGVALKGGVIGEIDKVDAGHVISANDENKAVAYPGAKIRTIVVGRPKGLSPGYTPQINFGNCHSPGRIAKILSKV---VGKEVHENPENVANGENFTGIVVFQKPLVIDKMERFQNLAKFALMDSNGVVGI 469          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 46/184 (25.00%), Postives = 87/184 (47.28%), Query Frame = 3
Query:   15 LGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQ---IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKK 557
            +G+VE+G +  G  +   P     EV S+     + + A PG+N+   +K +   D  R        + P    +   + V I++ P +       ++ +   HT+   V    L+  ID ++  E++++P F K GDA   +++  + + +E F+  P L RF +RD  +T+A   + N+ KK
Sbjct:  363 IGKVESGTISVGQSIHIMPGKTKVEVISLTGDICSFKTARPGENITIALKGIEGDDSIRPGSILAEINRPVPVVSEIEAIVYILDMPEERRLFTPSFSAIFHAHTAVEDVTVKSLIATIDTKTSTEIKQKPTFCKVGDAVKCRLVLGRAVCLEEFTTNPQLARFTIRDSTKTIAFGKVINIGKK 546          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EFTU_BIGNA (Elongation factor Tu, chloroplastic OS=Bigelowiella natans GN=tufA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 54/186 (29.03%), Postives = 89/186 (47.85%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNV 548
            GTV  GRVE G +K G VV     GL    +T V  +EM  + LQE++ GDNVG  ++ +   D++RG V   ++        +F +QV I+    + G  + P    +     V+ +++  KI+     E   E + +  GD   + +   +P+ +E         RFA+R+  +TV   V+ NV
Sbjct:  235 GTVATGRVERGGVKIGDVVEI--VGLRETRSTTVTGLEMFQKMLQESIAGDNVGMLLRGIQKADIQRGMVV--AQPGSITPHVSFDAQVYILTK--EEGGRHTPFFKGYRPQFYVRTTDVTGKIESLKSDEDNTEMRMVVPGDRVTMSVELVQPIAIEKGM------RFAIREGGRTVGAGVVSNV 408          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAT (Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 51/185 (27.57%), Postives = 92/185 (49.73%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNV 548
            GTV  GRVE G +K G    +V    + +T+ V  +EM  + L+E++ GDNVG  ++ +  KD++RG V   +K    +   +F +QV I+N   + G  + P    +     V+ +++  KI+     +   E + +  GD   + +   +P+ +E         RFA+R+  +TV   V+ N+
Sbjct:  235 GTVATGRVERGTVKVGEAIEIVGLREAPVTSIVTGLEMFQKTLEESVAGDNVGILLRGIQKKDIERGMVL--AKPGTIKPHKSFEAQVYILNK--EEGGRHTPFFQGYRPQFYVRTTDVTGKIESFQADD-GSETQMVMPGDRIKMVVQLIQPIAIEKGM------RFAIREGGRTVGAGVVFNI 408          
The following BLAST results are available for this feature:
BLAST of CX294722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
ERF3_SCHPO1.755e-1629.51Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_HUMAN9.629e-1524.58HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_PONAB1.642e-1424.58HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT2.802e-1424.02HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE2.802e-1423.46HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN8.151e-1423.60HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
EF1A_ENCCU8.151e-1424.58Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
ERF3_DICDI6.901e-1325.00Eukaryotic peptide chain release factor GTP-bindin... [more]
EFTU_BIGNA3.787e-1129.03Elongation factor Tu, chloroplastic OS=Bigelowiell... [more]
EFTU_CHLAT4.945e-1127.57Elongation factor Tu, chloroplastic OS=Chlorokybus... [more]

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Properties
Property NameValue
Genbank descriptionC05055B09SK FlavSen1 Citrus clementina cDNA clone C05055B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294722 ID=CX294722; Name=CX294722; organism=Citrus clementina; type=EST; length=608bp
TTGGAACCGTCCCATTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGT
ATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTC
ACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCC
GTTAGGGACATGCGTCAGACTGTTGCTGTTGNTGTGATTAAGAATGTTGA
AAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGA
GTGAATCG
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