CX294726

Overview
NameCX294726
Unique NameCX294726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig571 contig Ccv1_Contig571:1..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294726 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.257e-29
Identity = 74/198 (37.37%), Postives = 107/198 (54.04%), Query Frame = 1
Query:    1 VNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTKNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDD 594
            VN YLS+P    TS+  + +   R+ LE + + L  EK   F++CI WARL+F+ +F+N ++QL+F FP+D+ TSTG PFWS PKR P PL F   +  H  F++AA+ L A  +G+       +P +    +     P F PK   KI  +E      TA+  D   +  +   L      +  GFRL P +FEKDD
Sbjct:  624 VNMYLSSPNFLETSLKTSSNP--REVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHFDFIVAAASLYAFNYGLKS---ETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETAANKDKQELKSIADSLPPPSSLV--GFRLTPAEFEKDD 814          
BLAST of CX294726 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 70/204 (34.31%), Postives = 117/204 (57.35%), Query Frame = 1
Query:    1 VNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTKNPKMLAEAVDKVMVPDFLPKKDAKI-LTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS-----GFRLKPIQFEKDD 594
            VN YL++P     ++  AG  Q  + LE +   L  ++ + + DC+TWA   +   +S+ ++QL+  FP    TS+GA FWS PKR PHPL F   +P HL +VMAA+ L A+T+G+     +++  ++A+ +  + VP F PK   +I +++++  + S  ++DD+         LE+ +  LP+     GF++ PI FEKDD
Sbjct:  662 VNQYLTDPKFMERTLQLAG-TQPLEVLEAIHCSLVLQRPQTWADCVTWAYQHWHTQYSHNIQQLLHNFPPAQLTSSGALFWSGPKRCPHPLTFDINNPLHLDYVMAAANLFAQTYGL---GGSQDCAVVAKLLQSLPVPKFAPKSGIRIHVSEQELQSTSATTIDDS--------HLEELKTALPTPDKLLGFKMYPIDFEKDD 853          
BLAST of CX294726 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 54/182 (29.67%), Postives = 91/182 (50.00%), Query Frame = 1
Query:   58 DAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTKNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQC---RKNLPSGFRLKPIQFEKDD 594
            + Q+ +   +V++ L +    I+  C+  ARLKFE YF+++  QL+  FP +     G+ FW +PKR P P++F   +P HL F+ +A+ L A  + IP  +   +   L + + +V + +F P     + TDE A       V      N  + +LE+     K   S  ++  + FEKDD
Sbjct:  675 NGQSLEGCFQVIKLLSRRP-RIWSQCVELARLKFEKYFNHKALQLLHCFPLETRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQSAAKLYATVYCIPFSEKDLSVNSLMDILSEVKIEEFKPSNKV-VQTDETARKPDHVPVSSEDERN-AVFQLEEALSSNKATKSDLQMTVLSFEKDD 853          
BLAST of CX294726 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 61/187 (32.62%), Postives = 95/187 (50.80%), Query Frame = 1
Query:   37 TSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIP-IPDWTKNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDD 594
            TS+A+  + Q    L+ VL  L + + + +QDC+ WA   ++  F   +KQL+  FP +     G PFWS PK+ P PL+F +   +HL +V+AA+ L A+  G+P   DWT   ++L            LP+ D + +    A+ L  AS   A    +   +L +  +    G  LKP+ FEKDD
Sbjct:  638 TSLADMDEPQTLTLLKPVLGVL-RVRPQNWQDCVAWALGHWKLCFHYGIKQLLRHFPPNKVLEDGTPFWSGPKQCPQPLEFDTNQDTHLLYVLAAANLYAQMHGLPGSQDWTALRELL----------KLLPQPDPQQMAPIFASNLELASA-SAEFGPEQQKELNKALEVWSVGPPLKPLMFEKDD 812          
BLAST of CX294726 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 50/160 (31.25%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  124 FQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTKNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQC---RKNLPSGFRLKPIQFEKDD 594
            +  C+  ARLKFE YF+++  QL+  FP D     G+ FW +PKR P P++F   +P HL F+  A+ L A  + IP  +   +   L   + +V + +F P     + TDE A       +      N  I +LE+     +   S  ++  + FEKDD
Sbjct:  696 WSQCVELARLKFEKYFNHKALQLLHCFPLDIRLKDGSLFWQSPKRPPSPIKFDLNEPLHLSFLQNAAKLYATVYCIPFAEEDLSADALLNILSEVKIQEFKPSNKV-VQTDETARKPDHVPISSEDERN-AIFQLEKAILSNEATKSDLQMAVLSFEKDD 853          
The following BLAST results are available for this feature:
BLAST of CX294726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBA1_SCHPO2.257e-2937.37Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1Y_MOUSE3.984e-2634.31Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA6_MOUSE5.766e-1729.67Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA7_HUMAN1.285e-1632.62Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBA6_HUMAN2.423e-1531.25Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC05055C01SK FlavSen1 Citrus clementina cDNA clone C05055C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294726 ID=CX294726; Name=CX294726; organism=Citrus clementina; type=EST; length=594bp
GTGAATGCCTATCTATCCAACCCAGTTGAATACACTACTTCTATGGCTAA
TGCAGGTGATGCTCAAGCTAGAGATAACTTGGAACGTGTCCTTGAGTGCC
TTGACAAGGAGAAGTGCGAAATATTCCAGGACTGCATCACCTGGGCTCGT
CTCAAGTTTGAAGATTATTTTTCCAACCGAGTGAAGCAGTTGATCTTTAC
ATTTCCTGAAGATGCTGCTACCAGTACTGGGGCTCCATTCTGGTCTGCCC
CAAAGCGATTCCCTCATCCTCTTCAGTTCTCATCTGCGGATCCCAGTCAC
CTACACTTTGTTATGGCAGCCTCCATACTACGAGCAGAGACATTTGGCAT
CCCTATTCCTGATTGGACCAAGAATCCTAAGATGTTGGCTGAGGCTGTTG
ACAAAGTGATGGTACCAGATTTTCTGCCAAAGAAAGATGCAAAAATCTTA
ACGGATGAGAAGGCTACTACTCTCTCCACTGCTTCTGTGGATGATGCAGC
GGTAATTAATGATCTGATTATAAAGTTAGAGCAGTGCAGAAAGAACCTGC
CATCTGGGTTCAGGTTGAAACCAATTCAGTTCGAAAAGGATGAT
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