CX294727

Overview
NameCX294727
Unique NameCX294727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVV-----QAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 287
            G RQLD+  A +  L E +     +  K ++ VF+DGGVRRGTDV KAL LGA GV +GRP  ++ +  G  GV K +++LRDE E++M L G  S+ E+
Sbjct:  454 GGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAEL 553          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.131e-16
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGVR +L+++  E  + M L+G +S+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELAILADSGIRTGLDVVRMIALGADSVLLGRAFVYALAAAGEAGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ESCF3 (L-lactate dehydrogenase [cytochrome] OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=lldD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.477e-16
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWD--TPGAVARL*DG 350
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+++ +V   D   P A+A L  G
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLNLIEKEMKVAMTLTGAKSISEISQDSLVQELDKALPAALAPLAKG 393          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.520e-16
Identity = 40/101 (39.60%), Postives = 64/101 (63.37%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LAV G+AGV+ +L++   E  + M L+G +++ EI+R+ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDLKILADSGIRSGLDVVRMIALGADTVLIGRAFLWALAVHGQAGVKNLLELFEKEMRVAMVLTGAKAISEISRDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.520e-16
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVA 335
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V       A A
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQELSKAPAAA 386          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376          
The following BLAST results are available for this feature:
BLAST of CX294727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
CYB2_YEAST8.661e-1746.00Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
LLDD_PSEAE1.131e-1640.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB1.131e-1640.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA81.131e-1640.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA71.131e-1640.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ESCF31.477e-1638.14L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_PSEPW2.520e-1639.60L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ECOSM2.520e-1637.84L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_SHISS3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]

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Properties
Property NameValue
Genbank descriptionC05055C02SK FlavSen1 Citrus clementina cDNA clone C05055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294727 ID=CX294727; Name=CX294727; organism=Citrus clementina; type=EST; length=453bp
ACGGAGCGCGCCAACTAGATTATGTCCCTGCAACTGTTATGGCTTTGGAA
GAGGTTGTTCAAGCTGCAAAAGGCCGAGTTCCTGTTTTCCTTGATGGTGG
GGTTCGTCGTGGAACCGATGTCTTCAAGGCTTTGGCTCTAGGAGCATCTG
GAGTATTTGTTGGAAGGCCAGTACCATTCTCGCTGGCAGTTGATGGAGAG
GCTGGTGTGAGAAAAGTGCTTCAGATGCTTCGTGATGAGTTTGAGCTAAC
AATGGCATTAAGTGGGTGCCGTTCGCTCAAGGAGATTACACGCAACCACA
TTGTGACTCATTGGGACACTCCAGGAGCTGTAGCCAGATTGTAAGATGGT
CTCCAACATCAACATTAAAACTTTTCATTTTTAAACAACTGTGATTCGAA
TAACCTAATCCCGGATTCAGGGATTAGCATTTTGTTAAGACGACAAGGAT
GTA
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