CX294727

Overview
NameCX294727
Unique NameCX294727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSINEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ECOUT (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain UTI89 / UPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLI (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain K12) GN=lldD PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLC (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
[Close]
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ECOL6 (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O6 GN=lldD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.291e-16
Identity = 40/101 (39.60%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EIT++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLYALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLV 376
The following BLAST results are available for this feature:
BLAST of CX294727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
LLDD_SHIF83.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB33.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_ECOUT3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOSE3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLU3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLI3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLC3.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOL63.291e-1639.60L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionC05055C02SK FlavSen1 Citrus clementina cDNA clone C05055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294727 ID=CX294727; Name=CX294727; organism=Citrus clementina; type=EST; length=453bp
ACGGAGCGCGCCAACTAGATTATGTCCCTGCAACTGTTATGGCTTTGGAA
GAGGTTGTTCAAGCTGCAAAAGGCCGAGTTCCTGTTTTCCTTGATGGTGG
GGTTCGTCGTGGAACCGATGTCTTCAAGGCTTTGGCTCTAGGAGCATCTG
GAGTATTTGTTGGAAGGCCAGTACCATTCTCGCTGGCAGTTGATGGAGAG
GCTGGTGTGAGAAAAGTGCTTCAGATGCTTCGTGATGAGTTTGAGCTAAC
AATGGCATTAAGTGGGTGCCGTTCGCTCAAGGAGATTACACGCAACCACA
TTGTGACTCATTGGGACACTCCAGGAGCTGTAGCCAGATTGTAAGATGGT
CTCCAACATCAACATTAAAACTTTTCATTTTTAAACAACTGTGATTCGAA
TAACCTAATCCCGGATTCAGGGATTAGCATTTTGTTAAGACGACAAGGAT
GTA
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