CX294727

Overview
NameCX294727
Unique NameCX294727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.332e-16
Identity = 38/101 (37.62%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+++ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGQAGVANLLNLIEKEMKVAMTLTGAKTISEISKDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_KLEP3 (L-lactate dehydrogenase [cytochrome] OS=Klebsiella pneumoniae (strain 342) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.576e-16
Identity = 38/101 (37.62%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+ GV  +L ++  E ++ M L+G ++++EI+R+ +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADSVLLGRAYLYALATHGKQGVANLLNLIEKEMKVAMTLTGAKTIREISRDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_STRMK (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain K279a) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 308
            G RQLD V +T  AL  +  A +G + +  D G+R G DV + LALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G R + +I R+ +V+
Sbjct:  276 GGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARRIADIGRDSLVS 377          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V +T  AL  + +A KG + +  D G+R G DV + +ALGA GV +GR   ++LA  G+AGV  +L+++  E  + M L G +++ +I+ + +V
Sbjct:  276 GGRQLDGVLSTAHALPAIAEAVKGDITLLADSGIRSGLDVVRMIALGADGVLLGRAFAYALAAAGQAGVANLLELIDKEMRVAMTLIGAKTIADISADSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 287
            G RQLD V ++  AL  +  A   R+ V  DGGVR G DV + LALGA GV +GR   ++LA  GEAGV ++L ++  E  + MAL+G R +  I
Sbjct:  276 GGRQLDGVLSSARALPAIADAVGDRLTVLADGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTGVRDVASI 370          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 287
            G RQLD V ++  AL  +  A   R+ V  DGGVR G DV + LALGA GV +GR   ++LA  GEAGV ++L ++  E  + MAL+G R +  I
Sbjct:  276 GGRQLDGVLSSARALPAIADAVGDRLTVLADGGVRSGLDVVRMLALGARGVLIGRAYAYALAARGEAGVTQLLDLIDKEMRVAMALTGVRDVASI 370          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_STRM5 (L-lactate dehydrogenase [cytochrome] OS=Stenotrophomonas maltophilia (strain R551-3) GN=lldD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V +T  AL  +  A +G + +  D G+R G DV + LALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G R + +I R+ +V
Sbjct:  276 GGRQLDGVLSTARALPAIADAVQGDLKILADSGIRTGLDVVRMLALGADTVLLGRAFVYALAAQGEAGVANLLDLIAKEMRVAMTLTGARRIADIGRDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_CAUSK (L-lactate dehydrogenase [cytochrome] OS=Caulobacter sp. (strain K31) GN=lldD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 296
            G RQLD V ++  AL ++ +A   R+ V  DGGVR G DV + LALGA GV +GR   ++LA  G  GV ++L ++  E  + MAL+G  +L +I R+
Sbjct:  276 GGRQLDGVLSSARALPDIAEAVGDRLTVLADGGVRSGLDVVRMLALGAKGVLLGRAFVYALAARGGPGVSQLLDLIEKEMRVAMALTGVNTLDQIDRS 373          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_XANOR (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae GN=lldD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 290
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQIS 371          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_XANOP (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=lldD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 290
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQIS 371          
The following BLAST results are available for this feature:
BLAST of CX294727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
LLDD_ENT387.332e-1637.62L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_KLEP39.576e-1637.62L-lactate dehydrogenase [cytochrome] OS=Klebsiella... [more]
LLDD_STRMK1.251e-1540.20L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_SERP51.251e-1538.61L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_CAUCR1.251e-1545.26L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCN1.251e-1545.26L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_STRM51.633e-1540.59L-lactate dehydrogenase [cytochrome] OS=Stenotroph... [more]
LLDD_CAUSK1.633e-1542.86L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_XANOR2.133e-1540.63L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANOP2.133e-1540.63L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]

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Properties
Property NameValue
Genbank descriptionC05055C02SK FlavSen1 Citrus clementina cDNA clone C05055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294727 ID=CX294727; Name=CX294727; organism=Citrus clementina; type=EST; length=453bp
ACGGAGCGCGCCAACTAGATTATGTCCCTGCAACTGTTATGGCTTTGGAA
GAGGTTGTTCAAGCTGCAAAAGGCCGAGTTCCTGTTTTCCTTGATGGTGG
GGTTCGTCGTGGAACCGATGTCTTCAAGGCTTTGGCTCTAGGAGCATCTG
GAGTATTTGTTGGAAGGCCAGTACCATTCTCGCTGGCAGTTGATGGAGAG
GCTGGTGTGAGAAAAGTGCTTCAGATGCTTCGTGATGAGTTTGAGCTAAC
AATGGCATTAAGTGGGTGCCGTTCGCTCAAGGAGATTACACGCAACCACA
TTGTGACTCATTGGGACACTCCAGGAGCTGTAGCCAGATTGTAAGATGGT
CTCCAACATCAACATTAAAACTTTTCATTTTTAAACAACTGTGATTCGAA
TAACCTAATCCCGGATTCAGGGATTAGCATTTTGTTAAGACGACAAGGAT
GTA
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