CX294727

Overview
NameCX294727
Unique NameCX294727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 290
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV  +L ++  E  + M L+G  S+ +I+
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGVENLLTLIEKEMRVAMTLTGTHSIAQIS 371          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_AGRVS (L-lactate dehydrogenase [cytochrome] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=lldD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +A GA GV +GR   ++LA  G+AGV  +L +   E  + M L+G RS+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIAAAVKGDLTILADSGIRSGLDVVRMIAQGADGVLIGRAFVYALAAAGQAGVENLLDLFAKEMRVAMTLTGARSIAEISPDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPP (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis (strain Pestoides F) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPN (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPG (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Angola) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPE (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPB (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_YERPA (L-lactate dehydrogenase [cytochrome] OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 302
            G RQLD V +T  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  GEAGV  +L ++  E  + M L+G + + +I R+ +
Sbjct:  276 GGRQLDGVLSTARALPAIADAVKGDITILADSGIRTGLDVVRMIALGADSVLLGRAFVYALATAGEAGVINLLTLIEQEMRVAMTLTGAKRIADINRDSL 375          
The following BLAST results are available for this feature:
BLAST of CX294727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
LLDD_XANOM2.133e-1540.63L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_AGRVS2.133e-1539.60L-lactate dehydrogenase [cytochrome] OS=Agrobacter... [more]
LLDD_YERPY2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPP2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPN2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPG2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPE2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPB2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPA2.786e-1539.00L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionC05055C02SK FlavSen1 Citrus clementina cDNA clone C05055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294727 ID=CX294727; Name=CX294727; organism=Citrus clementina; type=EST; length=453bp
ACGGAGCGCGCCAACTAGATTATGTCCCTGCAACTGTTATGGCTTTGGAA
GAGGTTGTTCAAGCTGCAAAAGGCCGAGTTCCTGTTTTCCTTGATGGTGG
GGTTCGTCGTGGAACCGATGTCTTCAAGGCTTTGGCTCTAGGAGCATCTG
GAGTATTTGTTGGAAGGCCAGTACCATTCTCGCTGGCAGTTGATGGAGAG
GCTGGTGTGAGAAAAGTGCTTCAGATGCTTCGTGATGAGTTTGAGCTAAC
AATGGCATTAAGTGGGTGCCGTTCGCTCAAGGAGATTACACGCAACCACA
TTGTGACTCATTGGGACACTCCAGGAGCTGTAGCCAGATTGTAAGATGGT
CTCCAACATCAACATTAAAACTTTTCATTTTTAAACAACTGTGATTCGAA
TAACCTAATCCCGGATTCAGGGATTAGCATTTTGTTAAGACGACAAGGAT
GTA
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