CX294727

Overview
NameCX294727
Unique NameCX294727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SALPK (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A (strain AKU_12601) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLVEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SALPA (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A GN=lldD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLVEKEMKVAMTLTGAKSISEISGDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V +T  AL  +VQA    + V  D G+R G DV + LALGA GV +GR + ++L  DG+ GV  +L +   E  + M L+G  S+++I  + +V
Sbjct:  276 GGRQLDGVLSTAKALPPIVQAVGSDLTVLADSGIRSGLDVVRMLALGAKGVLLGRSMAYALGADGQRGVENMLDIFAREMHVAMTLTGVTSIEQIDASILV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SALPC (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi C (strain RKS4594) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SALG2 (L-lactate dehydrogenase [cytochrome] OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SALEP (L-lactate dehydrogenase [cytochrome] OS=Salmonella enteritidis PT4 (strain P125109) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV  +L ++  E ++ M L+G +++ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKTISEISGDSLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V +T  AL  + +A K  + +  D GVR G DV + +A GA  V +GR   ++LA  GE GV  +L +  +E  + M L+G ++LKEIT   +V
Sbjct:  276 GGRQLDGVLSTARALPAIAEAVKNDLVILADSGVRSGLDVVRMIAQGADAVMIGRAFVYALAAAGEKGVAHLLDLFANEMRVAMTLTGAQTLKEITCESLV 376          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_XANC5 (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lldD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.106e-15
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 290
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA  G+AGV  +L ++  E  + M L+G  S+ EI+
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAAGQAGVENLLTLIEKEMRVAMTLTGTHSIAEIS 371          
BLAST of CX294727 vs. ExPASy Swiss-Prot
Match: LLDD_SALTI (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhi GN=lldD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.106e-15
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 3
Query:    3 GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 305
            G RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+ GV  +L ++  E ++ M L+G +S+ EI+ + +V
Sbjct:  276 GGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKTGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLV 376          
The following BLAST results are available for this feature:
BLAST of CX294727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
LLDD_SALPK3.639e-1538.61L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPA3.639e-1538.61L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_PSEU24.752e-1540.59L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SALPC6.207e-1537.62L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALG26.207e-1537.62L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALEP6.207e-1537.62L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALCH6.207e-1537.62L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_BART16.207e-1540.59L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_XANC58.106e-1540.63L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_SALTI8.106e-1537.62L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionC05055C02SK FlavSen1 Citrus clementina cDNA clone C05055C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294727 ID=CX294727; Name=CX294727; organism=Citrus clementina; type=EST; length=453bp
ACGGAGCGCGCCAACTAGATTATGTCCCTGCAACTGTTATGGCTTTGGAA
GAGGTTGTTCAAGCTGCAAAAGGCCGAGTTCCTGTTTTCCTTGATGGTGG
GGTTCGTCGTGGAACCGATGTCTTCAAGGCTTTGGCTCTAGGAGCATCTG
GAGTATTTGTTGGAAGGCCAGTACCATTCTCGCTGGCAGTTGATGGAGAG
GCTGGTGTGAGAAAAGTGCTTCAGATGCTTCGTGATGAGTTTGAGCTAAC
AATGGCATTAAGTGGGTGCCGTTCGCTCAAGGAGATTACACGCAACCACA
TTGTGACTCATTGGGACACTCCAGGAGCTGTAGCCAGATTGTAAGATGGT
CTCCAACATCAACATTAAAACTTTTCATTTTTAAACAACTGTGATTCGAA
TAACCTAATCCCGGATTCAGGGATTAGCATTTTGTTAAGACGACAAGGAT
GTA
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