CX294729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 2.517e-33 Identity = 73/150 (48.67%), Postives = 91/150 (60.67%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------------YRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589 +YVGNLPGD+RE+EVED+F+KYG I ++D+K R P +AFVEFE+ RDAEDA+R RDGY+FDG R+RVE YRV+V GLP + SWQDLKDHMR AGDVC++ V RDG+ Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGT 159
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 4.443e-30 Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDG 586 +YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GYD+ RLRVE ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG 147
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 7.579e-30 Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDG 586 +YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GYD+ RLRVE ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG 146
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 7.579e-30 Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDG 586 +YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GYD+ RLRVE ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG 146
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15 Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 568 +Y+G L RER+VE F YG I +DLK GY FVEF++ RDA+DA+ +G D G R+ VE A EYR++V L S SWQDLKD+MR+AG+V ++ Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYA 133
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15 Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 568 +Y+G L RER+VE F YG I +DLK GY FVEF++ RDA+DA+ +G D G R+ VE A EYR++V L S SWQDLKD+MR+AG+V ++ Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYA 133
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS6_HUMAN (Splicing factor, arginine/serine-rich 6 OS=Homo sapiens GN=SFRS6 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14 Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRD 583 +Y+G L ++RE++++ F YG + +DLK GY FVEFE++RDA+DA+ +G + G R+ VE A EYR++V L S SWQDLKD MR+AG+V ++ ++ Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKE 144
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS6_BOVIN (Splicing factor, arginine/serine-rich 6 OS=Bos taurus GN=SFRS6 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14 Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRD 583 +Y+G L ++RE++++ F YG + IDLK GY FVEFE++RDA+DA+ +G + G R+ VE A E+R++V L S SWQDLKD MR+AG+V ++ ++ Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKE 144
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS5_RAT (Splicing factor, arginine/serine-rich 5 OS=Rattus norvegicus GN=Sfrs5 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13 Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFR 580 +++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ DG + R+ +E A E R++V L S SWQDLKD MR+AG+V F+ R Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS5_HUMAN (Splicing factor, arginine/serine-rich 5 OS=Homo sapiens GN=SFRS5 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13 Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFR 580 +++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ DG + R+ +E A E R++V L S SWQDLKD MR+AG+V F+ R Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141 The following BLAST results are available for this feature:
BLAST of CX294729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294729 ID=CX294729; Name=CX294729; organism=Citrus clementina; type=EST; length=590bpback to top |