CX294729

Overview
NameCX294729
Unique NameCX294729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig572 contig Ccv1_Contig572:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.517e-33
Identity = 73/150 (48.67%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------------YRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDGS 589
            +YVGNLPGD+RE+EVED+F+KYG I ++D+K   R P +AFVEFE+ RDAEDA+R RDGY+FDG R+RVE                                           YRV+V GLP + SWQDLKDHMR AGDVC++ V RDG+
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGT 159          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.443e-30
Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDG 586
            +YVGNLP D+RE+++EDLFYKYG I  I+LK       +AFV FE+ RDAEDAI GR+GYD+   RLRVE                             ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG
Sbjct:   17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG 147          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.579e-30
Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDG 586
            +YVGNLP D+RE+++EDLFYKYG I  I+LK       +AFV FE+ RDAEDAI GR+GYD+   RLRVE                             ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG
Sbjct:   16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG 146          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.579e-30
Identity = 69/136 (50.74%), Postives = 85/136 (62.50%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRDG 586
            +YVGNLP D+RE+++EDLFYKYG I  I+LK       +AFV FE+ RDAEDAI GR+GYD+   RLRVE                             ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG
Sbjct:   16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG 146          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 568
            +Y+G L    RER+VE  F  YG I  +DLK      GY FVEF++ RDA+DA+   +G D  G R+ VE A                                EYR++V  L S  SWQDLKD+MR+AG+V ++
Sbjct:    4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYA 133          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFS 568
            +Y+G L    RER+VE  F  YG I  +DLK      GY FVEF++ RDA+DA+   +G D  G R+ VE A                                EYR++V  L S  SWQDLKD+MR+AG+V ++
Sbjct:    4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYA 133          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS6_HUMAN (Splicing factor, arginine/serine-rich 6 OS=Homo sapiens GN=SFRS6 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRD 583
            +Y+G L  ++RE++++  F  YG +  +DLK      GY FVEFE++RDA+DA+   +G +  G R+ VE A                                      EYR++V  L S  SWQDLKD MR+AG+V ++   ++
Sbjct:    4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKE 144          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS6_BOVIN (Splicing factor, arginine/serine-rich 6 OS=Bos taurus GN=SFRS6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 47/146 (32.19%), Postives = 72/146 (49.32%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFRD 583
            +Y+G L  ++RE++++  F  YG +  IDLK      GY FVEFE++RDA+DA+   +G +  G R+ VE A                                      E+R++V  L S  SWQDLKD MR+AG+V ++   ++
Sbjct:    4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKE 144          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS5_RAT (Splicing factor, arginine/serine-rich 5 OS=Rattus norvegicus GN=Sfrs5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFR 580
            +++G L    RE++VE  F  YG I  IDLK      G+ FVEFE+ RDA+DA+   DG +    R+ +E A                                  E R++V  L S  SWQDLKD MR+AG+V F+   R
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS5_HUMAN (Splicing factor, arginine/serine-rich 5 OS=Homo sapiens GN=SFRS5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA-------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFR 580
            +++G L    RE++VE  F  YG I  IDLK      G+ FVEFE+ RDA+DA+   DG +    R+ +E A                                  E R++V  L S  SWQDLKD MR+AG+V F+   R
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141          
The following BLAST results are available for this feature:
BLAST of CX294729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RSP3_CAEEL2.517e-3348.67Probable splicing factor, arginine/serine-rich 3 O... [more]
SFRS9_MOUSE4.443e-3050.74Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFRS9_RAT7.579e-3050.74Splicing factor, arginine/serine-rich 9 OS=Rattus ... [more]
SFRS9_HUMAN7.579e-3050.74Splicing factor, arginine/serine-rich 9 OS=Homo sa... [more]
SFRS4_MOUSE1.062e-1537.78Splicing factor, arginine/serine-rich 4 OS=Mus mus... [more]
SFRS4_HUMAN1.062e-1537.78Splicing factor, arginine/serine-rich 4 OS=Homo sa... [more]
SFRS6_HUMAN2.004e-1432.19Splicing factor, arginine/serine-rich 6 OS=Homo sa... [more]
SFRS6_BOVIN7.614e-1432.19Splicing factor, arginine/serine-rich 6 OS=Bos tau... [more]
SFRS5_RAT4.935e-1334.75Splicing factor, arginine/serine-rich 5 OS=Rattus ... [more]
SFRS5_HUMAN4.935e-1334.75Splicing factor, arginine/serine-rich 5 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionC05055C05SK FlavSen1 Citrus clementina cDNA clone C05055C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294729 ID=CX294729; Name=CX294729; organism=Citrus clementina; type=EST; length=590bp
GAGCGTAGGACTCAATATCGTACACCGGGTAGCACATAATCCCTCTACGG
CCTTCAATAAATATCCATCCTTCCCTCGCCCAATTTCAAACCCTAATCTT
CGAAGCTCTTAGTCTTTGTGCACAACTATCGTTTAATCATCATTACAGGA
AAAAATGAGCAGCCGTGCAAGCAGAACTCTCTATGTTGGGAACCTGCCTG
GTGATATTCGGGAGAGAGAAGTGGAAGATCTGTTTTACAAGTATGGACCT
ATAGCCCACATTGACCTGAAGATCCCGCCAAGGCCTCCTGGTTATGCATT
TGTTGAGTTTGAAGAGGCTCGTGATGCTGAGGATGCAATTCGTGGTCGCG
ATGGCTATGATTTTGATGGGCATCGGTTACGGGTGGAACTTGCGCATGGT
GGGCGGGGCCGTTCATCATCTGATCGTCATAGTAGTCACAGCAGTGGCCG
AGGACGTGGAGTATCCAGGCGATCCGAATATCGTGTGTTAGTCACTGGAT
TACCCTCTTCTGCTTCATGGCAAGACCTTAAGGATCACATGCGTCGAGCA
GGAGATGTTTGTTTCTCACATGTTTTTCGCGATGGCAGTG
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