CX294729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS5_MOUSE (Splicing factor, arginine/serine-rich 5 OS=Mus musculus GN=Sfrs5 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12 Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------YRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFR 580 +++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ DG + R+ +E A + R++V L S SWQDLKD MR+AG+V F+ R Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12 Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394 +YVG LP D +E+E++F ++G I + + RPPG+AFVE+++ RDAEDA+R DG G R RVEL+ Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12 Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394 +YVGNL + E+E F KYGP+ ++ + PPG+AFVEFE+ RDAEDA R DG G R+RVE++ Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMS 82
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394 +YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG G R+RVEL+ Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 111
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394 +YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG G R+RVEL+ Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394 +YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG G R+RVEL+ Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82 The following BLAST results are available for this feature:
BLAST of CX294729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294729 ID=CX294729; Name=CX294729; organism=Citrus clementina; type=EST; length=590bpback to top |