CX294729

Overview
NameCX294729
Unique NameCX294729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig572 contig Ccv1_Contig572:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS5_MOUSE (Splicing factor, arginine/serine-rich 5 OS=Mus musculus GN=Sfrs5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.436e-12
Identity = 48/141 (34.04%), Postives = 66/141 (46.81%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------YRVLVTGLPSSASWQDLKDHMRRAGDVCFSHVFR 580
            +++G L    RE++VE  F  YG I  IDLK      G+ FVEFE+ RDA+DA+   DG +    R+ +E A                           +        R++V  L S  SWQDLKD MR+AG+V F+   R
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR 141          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394
            +YVG LP D   +E+E++F ++G I  +   +  RPPG+AFVE+++ RDAEDA+R  DG    G R RVEL+
Sbjct:    5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394
            +YVGNL     + E+E  F KYGP+ ++   +   PPG+AFVEFE+ RDAEDA R  DG    G R+RVE++
Sbjct:   13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMS 82          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394
            +YVGNL     + E+E  F  YGP+  +   I   PPG+AFVEFE+ RDAEDA+RG DG    G R+RVEL+
Sbjct:   42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 111          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394
            +YVGNL     + E+E  F  YGP+  +   I   PPG+AFVEFE+ RDAEDA+RG DG    G R+RVEL+
Sbjct:   13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82          
BLAST of CX294729 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.708e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  179 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 394
            +YVGNL     + E+E  F  YGP+  +   I   PPG+AFVEFE+ RDAEDA+RG DG    G R+RVEL+
Sbjct:   13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82          
The following BLAST results are available for this feature:
BLAST of CX294729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SFRS5_MOUSE1.436e-1234.04Splicing factor, arginine/serine-rich 5 OS=Mus mus... [more]
RSP6_CAEEL7.127e-1247.22Probable splicing factor, arginine/serine-rich 6 O... [more]
RBP1_DROME7.127e-1248.61RNA-binding protein 1 OS=Drosophila melanogaster G... [more]
SFRS7_MOUSE2.708e-1151.39Splicing factor, arginine/serine-rich 7 OS=Mus mus... [more]
SFRS7_HUMAN2.708e-1151.39Splicing factor, arginine/serine-rich 7 OS=Homo sa... [more]
SFRS7_BOVIN2.708e-1151.39Splicing factor, arginine/serine-rich 7 OS=Bos tau... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055C05SK FlavSen1 Citrus clementina cDNA clone C05055C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294729 ID=CX294729; Name=CX294729; organism=Citrus clementina; type=EST; length=590bp
GAGCGTAGGACTCAATATCGTACACCGGGTAGCACATAATCCCTCTACGG
CCTTCAATAAATATCCATCCTTCCCTCGCCCAATTTCAAACCCTAATCTT
CGAAGCTCTTAGTCTTTGTGCACAACTATCGTTTAATCATCATTACAGGA
AAAAATGAGCAGCCGTGCAAGCAGAACTCTCTATGTTGGGAACCTGCCTG
GTGATATTCGGGAGAGAGAAGTGGAAGATCTGTTTTACAAGTATGGACCT
ATAGCCCACATTGACCTGAAGATCCCGCCAAGGCCTCCTGGTTATGCATT
TGTTGAGTTTGAAGAGGCTCGTGATGCTGAGGATGCAATTCGTGGTCGCG
ATGGCTATGATTTTGATGGGCATCGGTTACGGGTGGAACTTGCGCATGGT
GGGCGGGGCCGTTCATCATCTGATCGTCATAGTAGTCACAGCAGTGGCCG
AGGACGTGGAGTATCCAGGCGATCCGAATATCGTGTGTTAGTCACTGGAT
TACCCTCTTCTGCTTCATGGCAAGACCTTAAGGATCACATGCGTCGAGCA
GGAGATGTTTGTTTCTCACATGTTTTTCGCGATGGCAGTG
back to top