CX294735

Overview
NameCX294735
Unique NameCX294735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:148..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.947e-43
Identity = 83/123 (67.48%), Postives = 98/123 (79.67%), Query Frame = 1
Query:  181 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC  IAK CP A++N+I
Sbjct:   23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMI 145          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.732e-43
Identity = 83/118 (70.34%), Postives = 100/118 (84.75%), Query Frame = 1
Query:  196 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            P  KVAVLGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH++T + V+G+ G++QL +AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++L   IAK CP AI+N+I
Sbjct:   25 PQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMI 142          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.364e-42
Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = 1
Query:  181 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            + G  P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP A+VN+I
Sbjct:   23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMI 145          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.301e-41
Identity = 80/118 (67.80%), Postives = 95/118 (80.51%), Query Frame = 1
Query:  196 PGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            P  KV +LGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVK L   IAK CP+A+VN+I
Sbjct:   28 PDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMI 145          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.241e-38
Identity = 74/116 (63.79%), Postives = 94/116 (81.03%), Query Frame = 1
Query:  202 FKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            +KVAVLGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  +L D L  +++V+IPAGVPRKPGMTRDDLFNINA IVKTL E +A+ CP A +++I
Sbjct:   83 YKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHII 198          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.897e-37
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTSACAQHCPEAMICVI 140          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.897e-37
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICII 140          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.478e-37
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVI 140          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.236e-37
Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII 140          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.236e-37
Identity = 75/115 (65.22%), Postives = 94/115 (81.74%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A+V +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCII 140          
The following BLAST results are available for this feature:
BLAST of CX294735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDHM1_ARATH3.947e-4367.48Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM_FRAAN6.732e-4370.34Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_BRANA4.364e-4267.48Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHM2_ARATH6.301e-4167.80Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHP_ARATH2.241e-3863.79Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_PONAB1.897e-3764.35Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_BOVIN1.897e-3764.35Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDHM_HUMAN2.478e-3764.35Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHM_PIG3.236e-3764.35Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_MOUSE3.236e-3765.22Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC05055C11SK FlavSen1 Citrus clementina cDNA clone C05055C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294735 ID=CX294735; Name=CX294735; organism=Citrus clementina; type=EST; length=550bp
ATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCA
GAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTG
CGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAG
AGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGG
ATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGG
CTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGAT
GTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAA
TGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCA
CGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGA
ATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCT
TTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
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