CX294735

Overview
NameCX294735
Unique NameCX294735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:148..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.227e-37
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICII 140          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.416e-37
Identity = 80/140 (57.14%), Postives = 101/140 (72.14%), Query Frame = 1
Query:  130 TLQIEGESSGLGRMDCRAKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            TL     +SGL  +  R    +P  KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD+SH+D+NA V    G ++L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIV+ L   IAK  PKA++ +I
Sbjct:    7 TLVQAAANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAII 144          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.230e-36
Identity = 74/115 (64.35%), Postives = 94/115 (81.74%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T AVV+G+LG +QL D L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+  P+A++ +I
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLAAACAQHRPEAMICII 140          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_CHLRE (Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = 1
Query:  181 AKGGSPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            A     G KVAVLGAAGGIGQPL+MLMK+N  VS L LYD+  TPGV AD+SH++T A V+GF  +  L +AL G D+VIIPAGVPRKPGMTRDDLF INAGIV+ L   + + CP A++N+I
Sbjct:   56 APSSGKGRKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKDGLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNII 177          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.721e-31
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T+  V GF G+  L  ALTG DIV+IPAG+PRKPGM R DLFN+NAGI+K L EGI   CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLFNVNAGIIKVLAEGIVASCPKALVGVI 117          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.004e-30
Identity = 68/115 (59.13%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  193 SPGFKVAVLGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQ-LEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKA 534
            S  FKVAVLGA GGIGQPL+ML+K+N  VS L L+D+   PGV ADI H++T + V G+    + LE AL G D+VIIPAGVPRKPGMTRDDLF  NA IV+ L     + CP+A
Sbjct:   26 SRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEA 140          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDHM_SCHMA (Malate dehydrogenase, mitochondrial (Fragment) OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.004e-30
Identity = 62/109 (56.88%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  223 AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            A+GGIG+PL++L+K +PL+S L LYD+ +  GV AD+SH++T A V   LG  +L + LTG ++VIIPAG+PRKPGMTRDDLFN NA IV  L +  AK CPKA++ +I
Sbjct:    1 ASGGIGEPLSLLLKQSPLISQLALYDIAHVKGVAADLSHIETQAHVTAHLGPGELAECLTGANVVIIPAGLPRKPGMTRDDLFNTNASIVAELIDSCAKNCPKAMICII 109          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_PSEHT (Malate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=mdh PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.115e-29
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V GF G   L +AL   DIV+IPAG+PRKPGM R DLFN+NAGI+KTL EGI   CPKA+V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTGLPAGSELSLYDVAPVVPGVAVDLSHIPTAVKVAGF-GADALNEALKDADIVLIPAGMPRKPGMDRADLFNVNAGIIKTLAEGIVASCPKALVGII 117          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.115e-29
Identity = 72/117 (61.54%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V G  G+  L DALTG D+V+IPAG+PRKPGM R DLFNINAGIVK L EG+A  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLFNINAGIVKNLIEGVADNCPNACVGII 117          
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.456e-29
Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT-PGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T+  V GF G+  L  AL G DIV+IPAGVPRKPGM R DLFN+NAGIVK L +G+A  CP A V +I
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLFNMNAGIVKNLVQGVADNCPNACVGII 117          
The following BLAST results are available for this feature:
BLAST of CX294735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDHM_RAT4.227e-3764.35Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_CAEEL9.416e-3757.14Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_MACFA1.230e-3664.35Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_CHLRE2.098e-3662.60Malate dehydrogenase, mitochondrial OS=Chlamydomon... [more]
MDH_COLP37.721e-3161.54Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDHM_SCHPO5.004e-3059.13Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHM_SCHMA5.004e-3056.88Malate dehydrogenase, mitochondrial (Fragment) OS=... [more]
MDH_PSEHT1.115e-2960.68Malate dehydrogenase OS=Pseudoalteromonas haloplan... [more]
MDH_ALTMD1.115e-2961.54Malate dehydrogenase OS=Alteromonas macleodii (str... [more]
MDH_IDILO1.456e-2960.68Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05055C11SK FlavSen1 Citrus clementina cDNA clone C05055C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294735 ID=CX294735; Name=CX294735; organism=Citrus clementina; type=EST; length=550bp
ATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCA
GAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTG
CGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAG
AGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGG
ATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGG
CTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGAT
GTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAA
TGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCA
CGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGA
ATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCT
TTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
back to top