CX294735

Overview
NameCX294735
Unique NameCX294735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3511 contig Ccv1_Contig3511:148..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECOL6 (Malate dehydrogenase OS=Escherichia coli O6 GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECOL5 (Malate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECOK1 (Malate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECOHS (Malate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECODH (Malate dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECOBW (Malate dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECO8A (Malate dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECO81 (Malate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECO7I (Malate dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
[Close]
BLAST of CX294735 vs. ExPASy Swiss-Prot
Match: MDH_ECO5E (Malate dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.117e-28
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  205 KVAVLGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTNAVVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 549
            KVAVLGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+     AL G D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGII 117
The following BLAST results are available for this feature:
BLAST of CX294735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
MDH_ECOL66.117e-2857.26Malate dehydrogenase OS=Escherichia coli O6 GN=mdh... [more]
MDH_ECOL56.117e-2857.26Malate dehydrogenase OS=Escherichia coli O6:K15:H3... [more]
MDH_ECOK16.117e-2857.26Malate dehydrogenase OS=Escherichia coli O1:K1 / A... [more]
MDH_ECOHS6.117e-2857.26Malate dehydrogenase OS=Escherichia coli O9:H4 (st... [more]
MDH_ECODH6.117e-2857.26Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECOBW6.117e-2857.26Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECO8A6.117e-2857.26Malate dehydrogenase OS=Escherichia coli O8 (strai... [more]
MDH_ECO816.117e-2857.26Malate dehydrogenase OS=Escherichia coli O81 (stra... [more]
MDH_ECO7I6.117e-2857.26Malate dehydrogenase OS=Escherichia coli O7:K1 (st... [more]
MDH_ECO5E6.117e-2857.26Malate dehydrogenase OS=Escherichia coli O157:H7 (... [more]

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Properties
Property NameValue
Genbank descriptionC05055C11SK FlavSen1 Citrus clementina cDNA clone C05055C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294735 ID=CX294735; Name=CX294735; organism=Citrus clementina; type=EST; length=550bp
ATCAATTTCATTTTCTGTGAATTGTTTGTTTTATCACAACTAAGTCTCCA
GAAACTCAGAACCATGCAGCAGCCAACTTCAGGAGCAAATCAACGCATTG
CGAGAATCGCTGCTCATCTCCATCCACCAACTCTCCAGATAGAGGGAGAG
AGTTCGGGTTTGGGGCGGATGGATTGCAGGGCAAAAGGCGGGTCGCCCGG
ATTCAAGGTGGCTGTATTGGGAGCTGCTGGAGGGATTGGACAGCCTCTGG
CTATGTTGATGAAGATCAATCCCTTGGTTTCAGTTCTTCATCTTTATGAT
GTTGTCAATACTCCTGGGGTTACTGCCGATATCAGTCACATGGATACAAA
TGCTGTGGTACGAGGATTTTTGGGGCAACAGCAATTGGAGGATGCCCTCA
CGGGCATGGACATTGTAATCATTCCCGCTGGTGTTCCTAGGAAACCTGGA
ATGACTAGGGATGATCTGTTCAATATCAATGCCGGAATTGTTAAGACCCT
TTGTGAAGGAATAGCTAAGTGCTGTCCAAAAGCTATTGTGAACTTGATTA
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