CX294744

Overview
NameCX294744
Unique NameCX294744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294744 vs. ExPASy Swiss-Prot
Match: DOM34_SCHPO (Protein dom34 OS=Schizosaccharomyces pombe GN=dom34 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.007e-35
Identity = 71/205 (34.63%), Postives = 125/205 (60.98%), Query Frame = 1
Query:    1 SGSRDAERXXXXXXXXXXXXDYDKEGSVLRIRGKNILENEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPAIAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVL 615
            +GS    R            D+D + + L I+G+    +  VK+G++HTL++ELHR F L K+ WD+ ALD +  A +P+ +A++  V++ EGLA+I L+   MTI R RI+  IPRK     + Y+  L+KF+++V Q+     DF+ ++  ++ASPGF     + ++   A +  L+ I+++K++ +++H+S+G+ HSL E+L
Sbjct:   53 TGSTSGSRVVMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRGDSSAYQKGLDKFYDSVFQSINSEFDFDKLKVVILASPGFVARGLYDYIFSMAVKLDLKQIVKSKNKFVILHSSTGHIHSLNEIL 257          
BLAST of CX294744 vs. ExPASy Swiss-Prot
Match: DOM34_YEAST (Protein DOM34 OS=Saccharomyces cerevisiae GN=DOM34 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.470e-18
Identity = 49/191 (25.65%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   61 DYDKEGSVLRIRGKNILE-----NEHVKIGAFHTLEIELHRAFVLRKDLWDSLALDTLHQAADPTASADLAVVLMQEGLAHILLVGRSMTITRSRIETSIPRKHGPA-IAGYESALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVL 615
            D+D +   L+ +G  + +     N  + +G + +  ++    F + K  ++      L++A +    +D A V++QEG+AH+ LV  S TI + +IE S+P+K     +  ++    KF++ +  A  K ++F+ ++  ++ SPGF        +   AE    + I++NK    + H S+GY   + EVL
Sbjct:   73 DFDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKFDEKTEKFYKAIYSAMKKDLNFDKLKTIILCSPGFYAKILMDKIFQYAEEEHNKKILDNKGMFFIAHCSTGYLQGINEVL 263          
The following BLAST results are available for this feature:
BLAST of CX294744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DOM34_SCHPO1.007e-3534.63Protein dom34 OS=Schizosaccharomyces pombe GN=dom3... [more]
DOM34_YEAST9.470e-1825.65Protein DOM34 OS=Saccharomyces cerevisiae GN=DOM34... [more]

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Properties
Property NameValue
Genbank descriptionC05055D10SK FlavSen1 Citrus clementina cDNA clone C05055D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294744 ID=CX294744; Name=CX294744; organism=Citrus clementina; type=EST; length=617bp
TCTGGTTCAAGAGATGCAGAGCGTGTCAAGCTTAAGTTGGAAATCAAAGT
TGAGGTGGTGGATTATGACAAAGAAGGGTCTGTATTGCGTATACGTGGAA
AGAATATCCTAGAAAATGAACATGTTAAAATTGGAGCTTTCCATACTTTG
GAGATTGAGCTGCATCGAGCATTTGTGTTGAGAAAGGATCTCTGGGACTC
ATTGGCCTTAGATACACTTCATCAGGCAGCAGATCCAACTGCCAGTGCAG
ATCTTGCAGTTGTTTTAATGCAAGAAGGTTTAGCACATATCCTCCTTGTT
GGTAGAAGCATGACGATCACTCGTTCACGAATAGAAACTTCAATTCCTCG
CAAGCATGGTCCTGCAATTGCTGGTTATGAGTCGGCTTTGAATAAGTTCT
TTGAGAATGTTCTACAGGCTTTCCTGAAACATGTTGATTTCAATGTGGTT
CGGTGTGCTGTGATTGCAAGTCCTGGTTTCACAAAGGATCAGTTTCATCG
TCACCTATTATTAGAGGCAGAAAGAAGGCAGTTGAGACCAATTATTGAGA
ACAAGTCACGCATAATTCTTGTCCATACAAGTTCTGGATACAAGCATAGT
TTGAGAGAGGTATTGGA
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