CX294745

Overview
NameCX294745
Unique NameCX294745
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14336 contig Ccv1_Contig14336:1152..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPQ_YEAST (T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae GN=CCT8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  104 SLILRGANDYMLDEMERALHDAICTVKRTLESN--TVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDL---AKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMK 589
            ++ILRGA    LD++ERA+ D +  VK  ++ +   ++ G GA E  L   +           QLA+ +FA +  ++P+ LA  A  D  E++  L A H+  +  A K      G+D+   +   +++  E  + +   +K   I   TEAA T+L ID +I   K
Sbjct:  383 TIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKK 549          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_ENCCU (T-complex protein 1 subunit delta OS=Encephalitozoon cuniculi GN=CCT4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 46/159 (28.93%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  104 SLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNL-EAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            +++LRG +D +++E ER+L+DA+C VK   E   +V GGG++E  +++ L    +T G+     L E A++   +P  LA NA     E+V++LR         ++ K     G+ +  G   + + +  V++PA   + ++    E    IL+IDD++
Sbjct:  335 TILLRGCDDMVVEEAERSLNDALCVVKCLKELPFLVPGGGSIEMGIALMLS--ESTEGN--IYVLREIAKAFEGVPYFLARNAGLYPVEIVSELR---------SELKQNCCAGISVRSGHAGDMVRDDSVVQPAKVSISVVTLALETVSMILKIDDIL 480          
The following BLAST results are available for this feature:
BLAST of CX294745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPQ_YEAST4.473e-1229.34T-complex protein 1 subunit theta OS=Saccharomyces... [more]
TCPD_ENCCU3.787e-1128.93T-complex protein 1 subunit delta OS=Encephalitozo... [more]

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Properties
Property NameValue
Genbank descriptionC05055D11SK FlavSen1 Citrus clementina cDNA clone C05055D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294745 ID=CX294745; Name=CX294745; organism=Citrus clementina; type=EST; length=609bp
ATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGGTAGAAGAGCGTG
TTGCCGATGATGATGTGATTATGATAAAGGGGACTAAAACTACAAGTGCG
GTTTCCTTGATACTTAGAGGAGCAAATGACTATATGCTTGATGAGATGGA
GAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGACCCTTGAATCCA
ACACGGTGGTGGCAGGTGGAGGTGCAGTTGAGTCTGCCTTGTCTGTCTAT
TTGGAATACCTAGCTACAACGCTAGGATCCCGAGAGCAGTTGGCACTTGC
TGAGTTTGCTGAATCTTTATTAATCATACCAAAGGTGCTTGCTGTAAATG
CTGCTAAGGATGCGACTGAGTTGGTTGCAAAACTACGGGCCTACCACCAT
GCTGCACAAACGAAGGCTGATAAAAAACACTTGTCTAGCATGGGACTGGA
TCTTGCAAAGGGGACCATTCGTAACAACTTGGAAGCTGGAGTCATAGAGC
CTGCAATGAGCAAAGTGAAAATTATTCAGTTTGNCACGGAAGCAGCAATC
ACAATTCTTCGTATTGATGATATGATCAAGCTTATGAAAGATGAAAGTCA
GAATGAAGA
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