CX294745

Overview
NameCX294745
Unique NameCX294745
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14336 contig Ccv1_Contig14336:1152..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.751e-24
Identity = 64/170 (37.65%), Postives = 97/170 (57.06%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            + + G K   AV++++RG  +++++E+ R + DA+  V   +E   VV G GA E  +S+ L   A +LG REQLA+  FA +L IIP+ LA NA  D  +++ +L+A H   Q  A        G+D+  G + +  E GV EP   K + I   TE A+ ILRIDD+I
Sbjct:  361 VFVTGCKNPKAVTILVRGGTEHVVEEIARGIEDAVRAVACAVEDGKVVVGAGAPEIEVSLKLREWAPSLGGREQLAVEAFATALEIIPRTLAENAGLDPIDVLVELKAAHEKGQKYA--------GVDVDTGKVVDMKERGVFEPLRVKTQAIGSATEVAVMILRIDDII 522          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.751e-24
Identity = 64/167 (38.32%), Postives = 98/167 (58.68%), Query Frame = 2
Query:   80 GTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            G       ++ILRG  +  ++E ER+LHDAI  V+R +++++VVAGGGA+E  LS YL   + T+  ++QL +  +A++L IIP+ L  NA  DAT ++ KLRA H               G+D+    I +N EA V EPAM ++  +   +EAA  I+ +D+ IK
Sbjct:  363 GCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--------MWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIK 521          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.287e-24
Identity = 63/167 (37.72%), Postives = 98/167 (58.68%), Query Frame = 2
Query:   80 GTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            G       ++ILRG  +  ++E ER+LHDAI  V+R +++++VVAGGGA+E  LS YL   + T+  ++QL +  +A++L IIP+ L  NA  DAT ++ KLRA H               G+D+    I +N +A V EPAM ++  +   +EAA  I+ +D+ IK
Sbjct:  363 GCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--------MWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIK 521          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 67/180 (37.22%), Postives = 104/180 (57.78%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI--KLMKDESQ 601
            I ++G K   AV++++RG  ++++DE+ERAL DA+  VK  +E   V+  GGA E  L++ ++  A  +G +E LA+  FA++L IIPK LA NA  D  E++ K+ + H        K     +G+D+  G   + LE G+I P     + I+    AAI ILRIDD+I  K+ K E +
Sbjct:  361 IFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAISVDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEILVKVISEH--------KNKGLGIGIDVFAGEPADMLERGIIAPLRVTKQAIK-SARAAIMILRIDDVIAAKVSKPEGR 531          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 63/167 (37.72%), Postives = 98/167 (58.68%), Query Frame = 2
Query:   80 GTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            G       ++ILRG  +  ++E ER+LHDAI  V+R +++++VVAGGGA+E  LS YL   + T+  ++QL +  +A++L IIP+ L  NA  DAT ++ KLRA H               G+D+    I +N EA V EPA+ ++  +   +EAA  I+ +D+ IK
Sbjct:  363 GCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRAKHAQGG--------MWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIK 521          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 6.653e-24
Identity = 61/171 (35.67%), Postives = 100/171 (58.48%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            I   G     A +++LRGA   +LDE ER+LHDA+C + +T++ +  V GGG  E  ++  +  LA+    +E +A+  +A++L ++P ++A NA  D+ +LVA+LRA H   +T A        GLD+ +GTI +    G+ E    K +++    EAA  ILR+D++IK
Sbjct:  360 IHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTA--------GLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILR 562
            + I+G K   +VS+++RG  + ++DE ER++ DA+  V   L    V+ GGGA E  L+ ++  LAT +G +EQLA+  FA++L  +   L  NA  D  ++V KLRA H     + D K+LS   +DLA G + N  E GVIEP       I+  TEAA  I+R
Sbjct:  345 VFIEGCKNPRSVSIVIRGGLERLVDEAERSIRDALSAVADALRDGKVIPGGGAAEIELAKHIRRLATRVGGKEQLAIEAFAKALEGLAVTLVENAGLDPIDMVMKLRAAHE----REDGKYLS---IDLATGDLVNMREKGVIEPVSILANAIKAGTEAATIIMR 502          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            I   G     A +++LRGA   +LDE ER+LHDA+C + +T++ +  V GGG  E  ++  +  LA     +E +A+  +A++L ++P ++A NA  D+ +LVA+LRA H    T A        GLD+ +GTI +    G+ E    K +++    EAA  ILR+D++IK
Sbjct:  360 IHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTA--------GLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 109.768 bits (273), Expect = 1.135e-23
Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            I   G     A +++LRGA   +LDE ER+LHDA+C + +T++ +  V GGG  E  ++  +  LA     +E +A+  +A++L ++P ++A NA  D+ +LVA+LRA H    T A        GLD+ +GTI +    G+ E    K +++    EAA  ILR+D++IK
Sbjct:  360 IHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGNTTA--------GLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 61/179 (34.08%), Postives = 100/179 (55.87%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQN 604
            I   G  +  A +++LRGA  ++L+E ER++HDA+C +  T+     V G G  E  +S  ++ LA     ++ +A+  FA++L  IP ++A NA  D++ELV++L+A HH    KA        GL++  G I N  E GVIE    K +++    EAA  I+R+DD+++    +  N
Sbjct:  359 IRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRTVLGAGCSEMIMSKAVDELAAITPGKKAMAIESFAKALRQIPTIIANNAGYDSSELVSQLKAAHHQGDKKA--------GLNMRDGCIGNAEELGVIESFKVKQQVLVSAHEAAEMIMRVDDILRAAPRQRSN 529          
The following BLAST results are available for this feature:
BLAST of CX294745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
THSB_ARCFU1.751e-2437.65Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
TCPH_BOVIN1.751e-2438.32T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPH_MOUSE2.287e-2437.72T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
THSA_THEK82.986e-2437.22Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPH_CHICK5.094e-2437.72T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPB_BOVIN6.653e-2435.67T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
THSB_DESMO1.135e-2339.39Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
TCPB_MACFA1.135e-2335.67T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN1.135e-2335.67T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_DICDI1.482e-2334.08T-complex protein 1 subunit beta OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionC05055D11SK FlavSen1 Citrus clementina cDNA clone C05055D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294745 ID=CX294745; Name=CX294745; organism=Citrus clementina; type=EST; length=609bp
ATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGGTAGAAGAGCGTG
TTGCCGATGATGATGTGATTATGATAAAGGGGACTAAAACTACAAGTGCG
GTTTCCTTGATACTTAGAGGAGCAAATGACTATATGCTTGATGAGATGGA
GAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGACCCTTGAATCCA
ACACGGTGGTGGCAGGTGGAGGTGCAGTTGAGTCTGCCTTGTCTGTCTAT
TTGGAATACCTAGCTACAACGCTAGGATCCCGAGAGCAGTTGGCACTTGC
TGAGTTTGCTGAATCTTTATTAATCATACCAAAGGTGCTTGCTGTAAATG
CTGCTAAGGATGCGACTGAGTTGGTTGCAAAACTACGGGCCTACCACCAT
GCTGCACAAACGAAGGCTGATAAAAAACACTTGTCTAGCATGGGACTGGA
TCTTGCAAAGGGGACCATTCGTAACAACTTGGAAGCTGGAGTCATAGAGC
CTGCAATGAGCAAAGTGAAAATTATTCAGTTTGNCACGGAAGCAGCAATC
ACAATTCTTCGTATTGATGATATGATCAAGCTTATGAAAGATGAAAGTCA
GAATGAAGA
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