CX294745

Overview
NameCX294745
Unique NameCX294745
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            +   G K   A S++LRGA   +LDE ER+LHDA+C +   ++ +  VAG GA E  +S  +   A  +  +E LA+  F  +L  +P ++  NA  D+ ELV +LRA H      A+ +H  +MG+D+ KG + +  + GVIE    K+ ++    EA   ILR+DD+IK
Sbjct:  354 LRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEH------ANGRH--NMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIK 516          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.528e-23
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            +   G K   A +++LRGA D  LDE ER+LHDA+  + +T +    V GGG  E  +S  ++  A  +  ++ LA+  FA +L  +P +LA NA  D++ELV+KLR+  +          +S+ GLDL  GTI +  + G++E    K  ++   +EAA  +LR+D++I+
Sbjct:  354 LKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIY--------NGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIR 516          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 61/171 (35.67%), Postives = 96/171 (56.14%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            I   G     A +++LRGA   +LDE ER+LHDA+C + +T++    V GGG  E  ++  +  LA     +E +A+  FA++L ++P ++A NA  D+ +LVA+LRA H      A        GLD+ +GTI +    G+ E    K +++    EAA  ILR+D++IK
Sbjct:  360 IHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGHITA--------GLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            I   G     A +++LRGA   +LDE ER+LHDA+C + +T++    V GGG  E  ++  +  LA+    +E +A+  FA++L ++P ++A NA  D+ +LVA+LRA H   +  A        GLD+ +G+I +    G+ E    K +++    EAA  ILR+D++IK
Sbjct:  360 IHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGRITA--------GLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNIIK 522          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            + ++G K   +VS+++RG  + ++DE ERAL DA+ TV   +     VAGGGAVE  ++  L   A  +G +EQLA+  +A ++  +  +LA NA  D  + + +LR+ H     K         GL+L  G   +  + GVIEPA+ K+  I+  TEA   +LRIDD++
Sbjct:  367 VFVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNK-------WYGLNLFTGNPEDMWKLGVIEPALVKMNAIKAATEAVTLVLRIDDIV 529          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 63/194 (32.47%), Postives = 100/194 (51.55%), Query Frame = 2
Query:    2 FDSSLLGSXXXXXXXXXXXXXXIMIKGTKTTS---AVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDM 574
            F    LGS              + I G KTT+    VS+++RGAN+ +LDE ER+LHDA+C ++  ++   ++AGGGA E  +S  L   A T+   E     E+AE+L +IP  LA NA  ++  +V +LR  H   +        S+ G+ + +    N  E  +++P +     I+  +E   +ILRIDD+
Sbjct:  341 FTEDRLGSADVVEEVESDGSNIVTITGVKTTNKNPTVSVVIRGANNMVLDETERSLHDALCVIRCLVKERALIAGGGAPEIEVSYRLMKEARTMEGVEAFVWQEYAEALEVIPTTLAENAGLNSLNVVTELRLRHENGE--------SNSGISVRRSGTSNTYEDHILQPVLVSTSAIRLASECVKSILRIDDI 526          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.140e-22
Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMI 577
            + ++G K   +VS+++RG  + ++DE ERAL DA+ TV   +     VAGGGAVE  ++  L   A  +G +EQLA+  +A ++  +  +LA NA  D  + + +LR+ H     K         GL+L  G   +  + GVIEPA+ K+  ++  TEA   +LRIDD++
Sbjct:  367 VFVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNK-------WYGLNLFTGNPEDMWKLGVIEPALVKMNAVKAATEAVTLVLRIDDIV 529          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.795e-22
Identity = 57/171 (33.33%), Postives = 98/171 (57.31%), Query Frame = 2
Query:   68 IMIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            I   G +   A +++LRGA   +LDE ERA+HDA+  + +T+  + V  GGG  E  ++  +E  AT    ++ +A++ FA++L  +P +LA NA  D++ELVA+L+A H+            +MGLD+ +G I +    G++E    K  ++   +E A  +LR+D ++K
Sbjct:  356 IKFSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGN--------DTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTILK 518          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.227e-22
Identity = 63/178 (35.39%), Postives = 98/178 (55.06%), Query Frame = 2
Query:   71 MIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIKLMKDESQN 604
            + +G       +L+LRG  + ++ E+ER+LHDAI  VKR L++  +VAGGGA E  +S  L   + T+  ++Q+ +  FA++L +IP+ L  NA  DA E++ KLR  H    +K +K +    G+      I +N    V EPA+ K+  +   TEA   IL +D+ I     ES N
Sbjct:  364 LFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAH----SKGEKWY----GVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESAN 533          
BLAST of CX294745 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.227e-22
Identity = 56/170 (32.94%), Postives = 97/170 (57.06%), Query Frame = 2
Query:   71 MIKGTKTTSAVSLILRGANDYMLDEMERALHDAICTVKRTLESNTVVAGGGAVESALSVYLEYLATTLGSREQLALAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHAAQTKADKKHLSSMGLDLAKGTIRNNLEAGVIEPAMSKVKIIQFXTEAAITILRIDDMIK 580
            +  G   T   ++ILRG  +  +DE ER+LHD+I  V+R  +  +VVAGGGA+E  +S YL   + ++  ++QL +  FA++L +IP+ +A NA  D+T+++ +LR  H   +           G+D+    I +  E+ + EP++ K+  I   TEA   IL +D+ ++
Sbjct:  360 LFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGGAIEMEVSKYLRDYSLSIEGKKQLLINAFAKALEVIPRQIADNAGFDSTDILNQLRQKHAQGE--------KWFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDETVQ 521          
The following BLAST results are available for this feature:
BLAST of CX294745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
TCPB_CAEEL1.482e-2336.84T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPB_YEAST2.528e-2335.09T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_MOUSE4.312e-2335.67T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_RAT7.356e-2335.09T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
THSB_SULSH1.639e-2235.88Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
TCPD_KLULA1.639e-2232.47T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
THSB_SULSO2.140e-2235.29Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
TCPB_SCHPO2.795e-2233.33Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPH_YEAST6.227e-2235.39T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPH_DICDI6.227e-2232.94T-complex protein 1 subunit eta OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC05055D11SK FlavSen1 Citrus clementina cDNA clone C05055D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294745 ID=CX294745; Name=CX294745; organism=Citrus clementina; type=EST; length=609bp
ATTTGATTCGTCACTTCTTGGATCTGCTGATGAAGTGGTAGAAGAGCGTG
TTGCCGATGATGATGTGATTATGATAAAGGGGACTAAAACTACAAGTGCG
GTTTCCTTGATACTTAGAGGAGCAAATGACTATATGCTTGATGAGATGGA
GAGAGCCCTGCATGATGCTATATGTACTGTCAAGAGGACCCTTGAATCCA
ACACGGTGGTGGCAGGTGGAGGTGCAGTTGAGTCTGCCTTGTCTGTCTAT
TTGGAATACCTAGCTACAACGCTAGGATCCCGAGAGCAGTTGGCACTTGC
TGAGTTTGCTGAATCTTTATTAATCATACCAAAGGTGCTTGCTGTAAATG
CTGCTAAGGATGCGACTGAGTTGGTTGCAAAACTACGGGCCTACCACCAT
GCTGCACAAACGAAGGCTGATAAAAAACACTTGTCTAGCATGGGACTGGA
TCTTGCAAAGGGGACCATTCGTAACAACTTGGAAGCTGGAGTCATAGAGC
CTGCAATGAGCAAAGTGAAAATTATTCAGTTTGNCACGGAAGCAGCAATC
ACAATTCTTCGTATTGATGATATGATCAAGCTTATGAAAGATGAAAGTCA
GAATGAAGA
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